Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00552 ATGAGTTTTAGGGAGTGCAATGTAGAAAACAAGAATCTGTGTCTTCAAACCCCAACTTTTATTGAGTGGCTCAAACCATCTTCTTCTCTAACAAGTTCAGTATCACCACCTTCTTCCTTGGCTCAGCATGATCAAGTTTCCCAAGAAATCCAGTTTTTGCCCTTCAAGGAAGACCATGGAGTGCAAAAGGATGGTTTAGAAGTGAAAGAAGAGAAGGTGGAACAGGTGACTGTGGCTTTGCACATTGGATTGCCTAACGCAGGAAGCCCTGACCCTGATGATCATGATGCCAGTGAGAAGAAGGTTTTCCATGTAAAGGAGGAAGAACCCTTGAACAAAAGCTTCCAGGGTAACCAGGAGAGAAGATTTTGGATTCCAACTCCTGCACAGATCCTTGTTGGACCGATGCAGTTTGCTTGCTCCATCTGCAGCAAGACCTTCAATAGATATAACAATATGCAGATGCATATGTGGGGGCATGGATCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCAGCAATGCTAAGGCTACCATGTTACTGTTGTGCCCAGGGTTGCAAGAACAACATCAATCATCCTAGAGCTAAGCCCTTGAAGGACTTCAGAACTCTCCAAACCCACTACAAAAGAAAGCATGGTGCAAAACCATTTATGTGCCGAAAGTGTTCAAAATCCTTTGCAGTTAAAGGGGATTGGAGGACTCACGAAAAGAACTGCGGAAAGTTGTGGTATTGCACTTGTGGTTCAGATTTTAAGCACAAAAGGTCCCTCAAAGATCATATTAGATCCTTTGGGAAAGGCCACTCCCCACATCCTTCTCTTGAAGGCTTCGTTGAGGATGAGAAGGAATGCGTTACTGGATCTGATGAAGATGAAGTTGCTCATACATGA 906 0.4404 MSFRECNVENKNLCLQTPTFIEWLKPSSSLTSSVSPPSSLAQHDQVSQEIQFLPFKEDHGVQKDGLEVKEEKVEQVTVALHIGLPNAGSPDPDDHDASEKKVFHVKEEEPLNKSFQGNQERRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGAKPFMCRKCSKSFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHSPHPSLEGFVEDEKECVTGSDEDEVAHT* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00552 301 SUPERFAMILY beta-beta-alpha zinc fingers 208 242 IPR036236 -
Lapu5g00552 301 Gene3D Classic Zinc Finger 180 271 - -
Lapu5g00552 301 Pfam Zinc finger, C2H2 type 138 157 IPR013087 -
Lapu5g00552 301 SUPERFAMILY beta-beta-alpha zinc fingers 124 161 IPR036236 -
Lapu5g00552 301 SMART c2h2final6 185 217 IPR013087 -
Lapu5g00552 301 SMART c2h2final6 222 242 IPR013087 -
Lapu5g00552 301 SMART c2h2final6 138 160 IPR013087 -
Lapu5g00552 301 ProSiteProfiles Zinc finger C2H2 type domain profile. 138 165 IPR013087 -
Lapu5g00552 301 ProSitePatterns Zinc finger C2H2 type domain signature. 140 160 IPR013087 -
Lapu5g00552 301 PANTHER ZINC FINGER PROTEIN WIP2 28 288 IPR043584 GO:0003700|GO:0010468
Lapu5g00552 301 FunFam Zinc finger protein WIP2 191 273 - -
Lapu5g00552 301 Gene3D Classic Zinc Finger 137 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00552 Lapu-Chr5 5013281 5017081 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00552 7 291 C2H2 Transcription Factor Family AT1G08290 57.988 1.21e-120 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00552 zf-C2H2_6 0.00013 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00552 - - gmx:100819306 546.199
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00552 5 5013281 5017081 Lapu5g00552 5 5013281 5017081 ECH
Lapu5g00552 5 5013281 5017081 Lapu11g00327 11 6314445 6317986 PCT