Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00538 ATGGATGTAACCATGAACATAAGTGAGACCGAATATTCTAACTACTACTATTCCTCACCATCATCCACTTCTTCTCAAAGCCAACTATGCAATTCTCCATCGGATAATCCATCGTTGCATGCACAAGCAACAACACCAGCATTGAGTTCTCACAAGAGGAAAGCTGGGAGAAGAAAGTTTCGAGTGACGCGTCATCCAGTGTATAGAGGAGTCCGTCAGAGAAACGGTAACAAATGGGTGTGTGAAGTTCGTGAACCCAACAAGAAATCAAGGATATGGCTCGGGACATACTCTATACCAGAAATGGCTGCTAGGGCACATGACGTGGCTATCCTAGCACTTAAGGGTTCCTCTGCGATGTTCAATTTCCCTGATTCTGTTTCTCTTCTTCCTGTTGCAAAGTCATCTTCAGCTGCAGATATTAGAGTTGCTGCAGCAAAAGTTTCCGAGGTTTTTGTACCAACCAACCCTTCTTCATCCTCTACAACTGACTCAAAGGTTGAAATTGAAACTAACCCTTGTTCGGTGGAGGCTGTTGTTGATTTTGTCAACACTATGAATAACAATGACGAGTCCAACAGATCAGTGTTTTTTGACGAAGAGGCAATTTATAACATGCCAGGTTTGTTAGATAGTATGGCAGAGGGTCTTCTCATTACTCCACCTTCTATGGAGAGATTTGATTGGGACGAGAAACAGAGTCCAAGCATCTTTGAGATGCAGTGA 726 0.4311 MDVTMNISETEYSNYYYSSPSSTSSQSQLCNSPSDNPSLHAQATTPALSSHKRKAGRRKFRVTRHPVYRGVRQRNGNKWVCEVREPNKKSRIWLGTYSIPEMAARAHDVAILALKGSSAMFNFPDSVSLLPVAKSSSAADIRVAAAKVSEVFVPTNPSSSSTTDSKVEIETNPCSVEAVVDFVNTMNNNDESNRSVFFDEEAIYNMPGLLDSMAEGLLITPPSMERFDWDEKQSPSIFEMQ* 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00538 241 SMART rav1_2 67 130 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 SUPERFAMILY DNA-binding domain 67 126 IPR016177 GO:0003677
Lapu5g00538 241 ProSiteProfiles AP2/ERF domain profile. 67 124 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 PRINTS Ethylene responsive element binding protein signature 68 79 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 PRINTS Ethylene responsive element binding protein signature 90 106 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 20 231 IPR045277 GO:0003700
Lapu5g00538 241 MobiDBLite consensus disorder prediction 24 62 - -
Lapu5g00538 241 CDD AP2 68 126 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 Gene3D AP2/ERF domain 67 125 IPR036955 GO:0003700|GO:0006355
Lapu5g00538 241 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Lapu5g00538 241 FunFam Ethylene-responsive transcription factor 2 66 125 - -
Lapu5g00538 241 MobiDBLite consensus disorder prediction 24 49 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00538 Lapu-Chr5 4878233 4879566 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00538 45 225 AP2-EREBP Transcription Factor Family AT4G25490 50.276 1.89e-53 170
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Lapu5g00538 AP2 5.9e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00538 - - vra:106758293 290.812