Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00535 ATGAATTTTGAGATTGAATCCCCTTTTTCCTTTCAATCTTCTTCTACTATTTCCCAATCATCACCATGCACACCACTTTATAATAGTAACCCTAACCTAGTTTCACAACCTTCAGTGCATGCACAATTTGTAGTATCACACAAAAGGAAAGGTGGGAGGAAGAAGTTCAAGGAAACTCGCCACCCCATTTATAGGGGTGTCCGACAAAGAAAGGGAAAGTGGGTTTGTGAGCTCAGGGAACCGAAGAAGACCACAAGGATTTGGTTAGGGACATACCCTACACCTGAAATGGCAGCTAGGGCACATGATGTGGGTGCCCTAGCCATTAGGGGCACCTCAGCGATTCTAAACTTTCCAAATTCAGCTTCTCTTCTTCCAATAGTTAACTCCTCTTCACCTAAAGATATTCGAGCTGCTGCAGCAGAAGCTGCTGAGAGTTTCAGACCAATCACCTCTTCTTCCTTGTCCACTTCTCGTTACAGGAAAACTAGTCGCAAAACTAAGTGCAGGAGAGTTAAAACGGTTCCACAAATGGAGGGAAAGACGCAGGAAACAGTGTTGGACTCGTCCTTGAATATGTATAATTTGGATCGTGAAAAATGTGATGATGATGATATCAACAGTAGCACGGAGAAAAACAATTCTGATTTGTCTTCAACTGTGTTCTTCGATGAGGAGGCACTGTTTAACATGCCGGGTCTCTTGGACAGAATGGCAGAGAGTTTGTGCCTTCTTCCACTACCTTCAGTGGATTATTGGGATGATAATGCTTATCTCACAGACTTCAATTTATGGACCGATTGA 804 0.4316 MNFEIESPFSFQSSSTISQSSPCTPLYNSNPNLVSQPSVHAQFVVSHKRKGGRKKFKETRHPIYRGVRQRKGKWVCELREPKKTTRIWLGTYPTPEMAARAHDVGALAIRGTSAILNFPNSASLLPIVNSSSPKDIRAAAAEAAESFRPITSSSLSTSRYRKTSRKTKCRRVKTVPQMEGKTQETVLDSSLNMYNLDREKCDDDDINSSTEKNNSDLSSTVFFDEEALFNMPGLLDRMAESLCLLPLPSVDYWDDNAYLTDFNLWTD* 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00535 267 SUPERFAMILY DNA-binding domain 63 121 IPR016177 GO:0003677
Lapu5g00535 267 CDD AP2 62 121 IPR001471 GO:0003700|GO:0006355
Lapu5g00535 267 PRINTS Ethylene responsive element binding protein signature 85 101 IPR001471 GO:0003700|GO:0006355
Lapu5g00535 267 PRINTS Ethylene responsive element binding protein signature 64 75 IPR001471 GO:0003700|GO:0006355
Lapu5g00535 267 ProSiteProfiles AP2/ERF domain profile. 63 119 IPR001471 GO:0003700|GO:0006355
Lapu5g00535 267 MobiDBLite consensus disorder prediction 1 22 - -
Lapu5g00535 267 Gene3D AP2/ERF domain 63 120 IPR036955 GO:0003700|GO:0006355
Lapu5g00535 267 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 13 266 IPR045277 GO:0003700
Lapu5g00535 267 Pfam AP2 domain 62 111 IPR001471 GO:0003700|GO:0006355
Lapu5g00535 267 SMART rav1_2 63 125 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00535 Lapu-Chr5 4853106 4853909 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00535 15 266 AP2-EREBP Transcription Factor Family AT5G51990 41.245 2.15e-49 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Lapu5g00535 AP2 2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00535 - - vum:124831015 412.92