Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00525 ATGGAGTTTTGGGGTGCTGAGGTTAAGGTTGGGGAGTCTGTTAAGGTAGACCCAACTGAATTTGAGGCATGCATACACCTTTCTCAGGCTGCCCTTGGTGAGGCAAAGAAAGACAAACCAAATGAACCTGTGGTTGTGTACTTGAAGGTTGGTGAGCAGAAATTTGTCCTCGGAACACTCTCCAGGGAGAAAATCCCTCAAATATCTTTGGAATTGGTTTTGGAGAAGGAGTTTGAACTATCCCACAGCTCAAAGAATGCCAGCGTTCATTTCTGTGGATACAAGGCTTATTACTCTGGCGATGATAGCGAAGAGGATGAATTTACTGATAGCGATGAGGATATTCCATTGGTTAACACAGAGAATGGAAAACCTGAAATAAAAGCTGAAGAATTGAAGGCACTTGCATCTAAAAAGCCTGATGTCAAGGCTGGTGCTTCGGCGAAGAAGGTCAAGGTTGTTGAACCAGAGAAAGACAATGAGGACTCTGATGACGATTCTGACGAAGATGATTTTGGAGTTTCTGATGAAGAGATGGAGGATGCCGATAGTGATGACAGTGACGAGGATGATGACAGTGATGAAGATGATGACGAAGAGACCCCTCCTAAGAAGGCGGCTTTGGGAAAGAAGAGATCAAACGAGTCTGCATCAAAAACTCCTGTGTCCTCCAAGAAAGCTAAAAATGCTACTCCTGAAAAGACTGATGGTAAAAAAAGCGGAAATGCTGGAACTCCTCAACCAGTGAAGAAAGGTGGAAAGACTCCCAGCAGTGAAGCCAAGGACAAGAGTCCCAAGTCCGGTGGACTCTCTTGCAAAAGCTGCAGCAAGACTTTCAACTCCGAAAGTGGTCTGCAACAACATAGCAAGGCCAAGCATGGACAGTGA 888 0.4516 MEFWGAEVKVGESVKVDPTEFEACIHLSQAALGEAKKDKPNEPVVVYLKVGEQKFVLGTLSREKIPQISLELVLEKEFELSHSSKNASVHFCGYKAYYSGDDSEEDEFTDSDEDIPLVNTENGKPEIKAEELKALASKKPDVKAGASAKKVKVVEPEKDNEDSDDDSDEDDFGVSDEEMEDADSDDSDEDDDSDEDDDEETPPKKAALGKKRSNESASKTPVSSKKAKNATPEKTDGKKSGNAGTPQPVKKGGKTPSSEAKDKSPKSGGLSCKSCSKTFNSESGLQQHSKAKHGQ* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00525 295 ProSiteProfiles Zinc finger C2H2 type domain profile. 270 295 IPR013087 -
Lapu5g00525 295 ProSitePatterns Zinc finger C2H2 type domain signature. 272 293 IPR013087 -
Lapu5g00525 295 Pfam Nucleoplasmin-like domain 3 94 IPR041232 -
Lapu5g00525 295 MobiDBLite consensus disorder prediction 159 199 - -
Lapu5g00525 295 MobiDBLite consensus disorder prediction 102 295 - -
Lapu5g00525 295 MobiDBLite consensus disorder prediction 213 228 - -
Lapu5g00525 295 FunFam Histone deacetylase HDT1 1 100 - -
Lapu5g00525 295 MobiDBLite consensus disorder prediction 269 295 - -
Lapu5g00525 295 Gene3D Nucleoplasmin core domain 1 100 - -
Lapu5g00525 295 MobiDBLite consensus disorder prediction 124 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00525 Lapu-Chr5 4747798 4751380 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00525 1 96 C2H2 Transcription Factor Family AT5G03740 52.083 1.20e-28 109
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00525 NPL 1.9e-14 CL0055
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00525 - - gmx:100792094 400.593
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00525 5 4747798 4751380 Lapu5g00525 5 4747798 4751380 ECH
Lapu5g00525 5 4747798 4751380 Lapu11g00373 11 6792177 6795579 PCT