Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00522 ATGGCCGAGGGAGATCAATTCAGAAGCAAAAAGCCTGCATTGGATCCAGATCAAAGAATGAGGAAGAGGGGTAGGCCTCCAATGATGCTTTCATATTCTTCTTTCCGGAGCAGAGGCCGAGGACGTCCTCCTAGTTCTACAGGAATTTTCGAAAATCTAGCTTCCAACGTTGTCTATGGTGTTTCAAAACTTCATGTGCTTGGTGCTGCAAATGCGGAAACAGATGCTGGAACAAGCTTCCTCCCTCACCATCTCACTGTGAATGTTGGGGAGAACGTGCTAGAGAAGGTATCAACACTTGCTAAAGCATGCTCTCAAACTATTTGCGTACTTTCGGCTGTGGGTTCCTTATCGAGCGTTGTCTTTCGCAAGCCCGGTTTGACAAGTGCTGATACTGTGACGTATGAGGGGCGCTTTGAGATTTTGTCACTATCTGGAAAATGTACCTTTATCCCTGGTGAGAATGAGGTGCATGGAATACATAACTGGTGGAACCTTGCACTAGCTGACCGTAATGGAGTTGTTTTTGGAGGTTCTGTTGTGGGTCCAATGATTGTTGCTTCCCCTGTTGATCTAATTCTTGCCAGTTTCAAGCTAAAGAGTACGGAAAAAATCAGAAGGCGCGCAGCTGAGTCTTTGGCTGCTGCTGCTGCAGCAGCAGCAGCGTCAGCAGATTTGTCCTGTCGTATGGAAAGAGTCACAGAAACCGTTTCCGACAAATATCCAATGTTATATGCCAAAACGTTTCGCGGTTCTCCAACATCTGGACTTTCTCCAGGAACTGATAAAGCATCAGAGAGTGAGACTCCTAAAACAAGTGATAAAGCATCAGGGAGTGAGACTCCTAAAAAAACTGATAAAATATCAGAGAGTGTGACTCCTAAAACAACTGATAAAACATCAGAGAGTATCACTTCTACCACGGGAGGGCGCGCAGCCGGATCTTCTGTTGTTGCAGATTATTTCATTCGTTGGGATATAGACTTAGAAAAGATTCCCGATAAAGATCCAACGGAAGAAGGCGAAAAACAGAGAGGCAGATCACCAACATCTACGCTTTTAACTGATAAACCGCAAGAGAGTGACAGTCCTAAAACAACTGATAAACCACAAGAGAGTGACAGTCCTAAAACAAGTGATAAACCACTGGTGGAGGAACTCAGTTCTGAAACAATTGATAAACCAACTGAGAATGTCACCCCTGCAACAGCTGATATTCCATCAGAGAATCTCACTACTGCAGCAACTAGTAAATCACCAGAGAATGTCATTGCTTCAACATCTGATACATCAATACCTGTGATGCTGTGCTACTTCAATCAAGCATCAGACGATCTTCCTGTGGATCTGCATACATAG 1359 0.4437 MAEGDQFRSKKPALDPDQRMRKRGRPPMMLSYSSFRSRGRGRPPSSTGIFENLASNVVYGVSKLHVLGAANAETDAGTSFLPHHLTVNVGENVLEKVSTLAKACSQTICVLSAVGSLSSVVFRKPGLTSADTVTYEGRFEILSLSGKCTFIPGENEVHGIHNWWNLALADRNGVVFGGSVVGPMIVASPVDLILASFKLKSTEKIRRRAAESLAAAAAAAAASADLSCRMERVTETVSDKYPMLYAKTFRGSPTSGLSPGTDKASESETPKTSDKASGSETPKKTDKISESVTPKTTDKTSESITSTTGGRAAGSSVVADYFIRWDIDLEKIPDKDPTEEGEKQRGRSPTSTLLTDKPQESDSPKTTDKPQESDSPKTSDKPLVEELSSETIDKPTENVTPATADIPSENLTTAATSKSPENVIASTSDTSIPVMLCYFNQASDDLPVDLHT* 453
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00522 452 ProSiteProfiles PPC domain profile profile. 77 219 IPR005175 -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 332 423 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 1 47 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 393 423 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 294 313 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 332 346 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 277 293 - -
Lapu5g00522 452 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 198 IPR005175 -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 1 24 - -
Lapu5g00522 452 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 20 262 IPR039605 GO:0003680
Lapu5g00522 452 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 198 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 361 392 - -
Lapu5g00522 452 Gene3D - 82 216 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 252 313 - -
Lapu5g00522 452 MobiDBLite consensus disorder prediction 252 276 - -
Lapu5g00522 452 CDD DUF296 82 197 IPR005175 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00522 Lapu-Chr5 4722243 4725289 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00522 77 213 AT-hook Motif Nuclear Localized (AHL) Family AT5G62260 40.845 4.98e-25 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00522 - - pvu:PHAVU_005G127900g 411.379