Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00521 ATGGGGAGTAAAGTCAGCGACCACCGCTTGTCCACCGTCAGATCCATTGTCGGTTCAGAATTCTCGGACATGGAAATCATCAGAGCCCTTCACATGGCAAAAAACGATGTCAATGCGGCCATCAACATCATCTTCGACGCTCACACCGTCCCAAGATTCAATCCCACACGTCCCAACAATCAACTTTCAGTTTCGCCTCCAAAACCCTCCCCTCCCACTCCTATCATCACCAAGCATAGCTTCAGTGAACAAAGCACTGATTCTAACAGTGATGATTGGTGGTTTGTGAGTTGCGGGGAAGTGACGGGTTTGTCCACGTGTAAAGGGAGGATTATAAGCTCCGGCGAGAAGGTGATTTTCAAGTTTCCGATGAAAAAGTTATCATCGCCCTCTCCGGGGAAGGGGTTTGGACAGGGGAGGGGATTTGGACGGGCTGCGATGTGTTCGGAGATAGTTCGGTTCTCCACTGAACAATCTGGGGAGATAGGTAGAATACCGAATGAATGGGCTCGGTGTCTTTTGCCTCTCGTGAGGGATCATAAAGTTAGGATTGAGGGGCAGTGTAAATTCGCTCCTCAAGTTTTGGGTATCATGGACTCCATTATTTTGTCTGTGAGTGTATTTATCAATAGTTCAATGTTTGGTAAGCATAACCAGGTTTCTCTCAAGGATGCTGCCAACTCGACTGACGAATCAGTGTTTCATCCGCTACCAACCCTGTTTCAGTTGCTGGGTTTAAACCCTTTTAAAAAGGCAGAGTTAACTCCAGCTGATTTCTATTCCAACAAGCGTCCTCTAAGTGAAAGGGTGACATTACCACGTGCTAAGTTTGAGCATCCTTCTCAAAATGGCCATGAGATTGAGAATGAGAACGAGGAATCTCTTTCTGAAATTGATGTTGAGAACATTGTTGGTGTTGGGTCAAGCACAGAGTTAGAGGAAATGGACCCTCCTGTTAATCTTCAGTGTGACCTGCGGCCCTATCAAAAGCAAGCGCTTCATTGGATGATCCAGATGGAGAAGGGACAACAATGTATGGATGAGACGGCAACAACCCTCCATCCATGTTGGGAGGCATATCGCTTGGTTGACAAGAGGGAGCTTGTTGTTTACTTGAATGCATTTTCTGGTGAAGCTACAATAGAATTTCCCAGCACCCTTCAAATGGCTAGAGGAGGAATTTTGGCAGATGCTATGGGGCTTGGAAAGACCATCATGACCATATCCCTTCTCGTTGCCCATTCAGGAAAGGGTGAATCAGTAAGCAATCAGCCCATAACCAAGTCCTTTACTGAAGGTGGTGATGTTAGTGATACAGTGCACACTTTTTCAAGCATACCCAAGAAGGTAACCAAATTTTCTGGTTTTGATAAACCCGTGAAGCAAAGAAATTCTCTAACAAGTGGTGGCAACTTGATAATATGTCCAATGACTCTTCTTGGGCAATGGAAGGCAGAGATTGAAACTCATGTGCACCCTGGATCTCTGTCTCTATATGTTCACTATGGACAAAGTAGGCCAAAAGATGCAAAAAGTCTTGCTCAGAGTGATGTTGTAATTACTACATACGGAATTTTGGCCTCTGAATTTTCCAGCGAGAATGCAGATGATAATGGTGGACTCTTCTCAATTCGGTGGTTTAGAGTTGTTCTTGATGAAGCACATACCATAAAATCTTCTAAAAGCCAAGTTTCTGTTGCAGCTGCAGCTCTAATTGCTGACAGACGTTGGTGTCTAACAGGCACCCCGATTCAGAACAGCCTTGAGGATATTTATAGTCTTTTGCGGTTTCTGAGAATAGAGCCTTGGGGTCATTGGGCCTGGTGGAACAAACTTATTCAGAAACCATTTGAGGGTGGTGATGAAAGAGGGCTCAAATTAGTTCAATCAATTTTGAAGCCGATTATGTTGAGGAGAACCAAACATAGCACGGATCGAGAGGGCAAGCCCATTTTAGTTCTGCCTCCAGCTGATATGCAGGTAGTTTACTGTGAACAGACAGAAGCTGAAAATGACTTTTATGGAGCTCTATTCAAAAGATCTAAGGTAAAGTTTGATCAATTCGTTGAGCAAGGACGTGTTCTTCATAATTACGCTTCAATATTGGAATTACTTTTACGTCTCCGGCAATGTTGTGATCATCCATTTCTTGTAATGAGTCGAGGTGATACTCAAGAATTTGCGGATCTAAACAAACTAGCTAAGCGCTTCCTTAGAGGAACATATAATGCTTCAGATGGTGAACTAAAAGAGGCACCTTCACGGGCTTATGTTCAAGAAGTTGTGGAAGAGCTACGTAAAGGGGAACAAGGAGAGTGTCCAATATGCCTTGAAGCATTTGAAGATGCAGTGTTGACACCTTGTGCTCACCGATTATGCCGGGAATGCCTCTTGGCAAGTTTGCGAAATGCTACTTCTGGCCTATGTCCTGTTTGTAGGAAAGCAGTCAGCAGGCAGGATCTAATCACTGCCCCTACCGAGAATCGGTTTCAGGTGGATATTGAGAAGAACTGGGTAGAGTCGTGCAAGATAACTGCTCTTTTGAATGAACTTGAAAACCTTCGCTCATCAGGCTCTAAAAGCATTGTTTTCAGCCAGTGGACTGCTTTTCTGGACCTCTTGCAGATCCCCTTCACTCGCTTTGATGATTGTCTTTTTATTGGTGTAATACATTTTTGCAATGAAAATACCAAGGCGGTTTGTTCCTGTGTGAATTCACTTATCTACAGGAATAACATTTCATTTGTTCGACTTGACGGGACTCTGAATCTGCAGCAGCGGGAGAAAGTAATCAAGCAATTTTCAGAAGACAGCACCACTCTGGTGTTGTTAATGTCACTAAAAGCTGGTGGAGTGGGTATAAATCTAACTGCAGCTTCTAATGCCTTTGTCATGGACCCATGGTGGAATCCAGCTGTTGAGGAACAAGCTGTTATGCGAATTCATCGCATTGGACAAACAAAGAAGGTGGCCATTAGACGGTTTATTGTGAAGGGGACCGTTGAGGAGAGAATGGAAGCAGTACAAGCACGTAAACAACGAATGATTTCTGGTGCCTTAACTGATCAAGAAGTTCGAAGTGCACGAATTGAGGAGTTAAAGATGCTTTTTACGTAG 3117 0.4405 MGSKVSDHRLSTVRSIVGSEFSDMEIIRALHMAKNDVNAAINIIFDAHTVPRFNPTRPNNQLSVSPPKPSPPTPIITKHSFSEQSTDSNSDDWWFVSCGEVTGLSTCKGRIISSGEKVIFKFPMKKLSSPSPGKGFGQGRGFGRAAMCSEIVRFSTEQSGEIGRIPNEWARCLLPLVRDHKVRIEGQCKFAPQVLGIMDSIILSVSVFINSSMFGKHNQVSLKDAANSTDESVFHPLPTLFQLLGLNPFKKAELTPADFYSNKRPLSERVTLPRAKFEHPSQNGHEIENENEESLSEIDVENIVGVGSSTELEEMDPPVNLQCDLRPYQKQALHWMIQMEKGQQCMDETATTLHPCWEAYRLVDKRELVVYLNAFSGEATIEFPSTLQMARGGILADAMGLGKTIMTISLLVAHSGKGESVSNQPITKSFTEGGDVSDTVHTFSSIPKKVTKFSGFDKPVKQRNSLTSGGNLIICPMTLLGQWKAEIETHVHPGSLSLYVHYGQSRPKDAKSLAQSDVVITTYGILASEFSSENADDNGGLFSIRWFRVVLDEAHTIKSSKSQVSVAAAALIADRRWCLTGTPIQNSLEDIYSLLRFLRIEPWGHWAWWNKLIQKPFEGGDERGLKLVQSILKPIMLRRTKHSTDREGKPILVLPPADMQVVYCEQTEAENDFYGALFKRSKVKFDQFVEQGRVLHNYASILELLLRLRQCCDHPFLVMSRGDTQEFADLNKLAKRFLRGTYNASDGELKEAPSRAYVQEVVEELRKGEQGECPICLEAFEDAVLTPCAHRLCRECLLASLRNATSGLCPVCRKAVSRQDLITAPTENRFQVDIEKNWVESCKITALLNELENLRSSGSKSIVFSQWTAFLDLLQIPFTRFDDCLFIGVIHFCNENTKAVCSCVNSLIYRNNISFVRLDGTLNLQQREKVIKQFSEDSTTLVLLMSLKAGGVGINLTAASNAFVMDPWWNPAVEEQAVMRIHRIGQTKKVAIRRFIVKGTVEERMEAVQARKQRMISGALTDQEVRSARIEELKMLFT* 1039
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00521 1038 Gene3D - 383 651 IPR038718 -
Lapu5g00521 1038 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 843 1038 IPR001650 -
Lapu5g00521 1038 SMART helicmild6 902 985 IPR001650 -
Lapu5g00521 1038 FunFam DNA repair protein RAD5B 381 640 - -
Lapu5g00521 1038 Pfam Helicase conserved C-terminal domain 843 985 IPR001650 -
Lapu5g00521 1038 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 735 837 IPR013083 -
Lapu5g00521 1038 Pfam HIRAN domain 100 205 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lapu5g00521 1038 SMART ultradead3 321 623 IPR014001 -
Lapu5g00521 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 310 639 IPR027417 -
Lapu5g00521 1038 Gene3D - 655 1038 IPR027417 -
Lapu5g00521 1038 Pfam SNF2-related domain 328 717 IPR000330 GO:0005524|GO:0140658
Lapu5g00521 1038 Pfam Zinc finger, C3HC4 type (RING finger) 770 817 - -
Lapu5g00521 1038 SMART ring_2 773 812 IPR001841 -
Lapu5g00521 1038 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 86 1038 - -
Lapu5g00521 1038 SMART HIRAN_2 96 209 IPR014905 GO:0003676|GO:0008270|GO:0016818
Lapu5g00521 1038 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 651 1032 IPR027417 -
Lapu5g00521 1038 CDD SF2_C_SNF 839 996 - -
Lapu5g00521 1038 SUPERFAMILY RING/U-box 761 819 - -
Lapu5g00521 1038 CDD DEXDc_SHPRH-like 325 639 - -
Lapu5g00521 1038 ProSitePatterns Zinc finger RING-type signature. 788 797 IPR017907 -
Lapu5g00521 1038 ProSiteProfiles Zinc finger RING-type profile. 773 813 IPR001841 -
Lapu5g00521 1038 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 384 601 IPR014001 -
Lapu5g00521 1038 MobiDBLite consensus disorder prediction 55 88 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00521 Lapu-Chr5 4710968 4720073 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00521 1 1038 RAD5 or RAD16-like Gene Family AT5G22750 68.338 0.0 1464
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Lapu5g00521 SNF2_N 6.1e-84 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00521 K15505 - gmx:100794558 1763.43