Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00520 ATGGAGCCTCCCGTCGTGAGATCTAGAGGTCGCCCGCGCAAACGGAGAAGAGAAGAGGACGGAACTATCTCTAGCGATCCGAAAACGTTTCCCGAGGCGAAGAAGGCGCCTCCGGTTGCACTGGTTGGTCGATACGTGCTGAAAGAGTTCCGCAGGAACACGGTTCTTCTCGGCAAAGTTGTCCGCTACGAGCGCGGATTGTACAGAGTTGTGTATGAGAGTGGCGGTTTCGAGGATTTAGCTAGCACCGTGATTCGTAGGATACTGCTCCTTGATAGCTATTTCGACGATGATTTGATTCGGAGGAAAGGCGAATTGGAGGAATCGGTGTTGCCGAAGATCGCGGTGGAACCGGAAAGAGGTTCGAGCGAATTGCGCGGCGATTTATCGGTTGAGAACGAAGAGGAACGAAATGAAACGGACGATGAGTCGTGCGGCGTGTCTAGAGATTTGAGTTCCGATGCCGAAACGCAAATACCGCCTCCACCAACGTTGCCGCCGTCTTCTGGAACAATTGGCGTTCCGGAATCGTGCGTTTTGAATCTCCTTTCAGTGTGCATTGATTGGAGTTTGCTTGATGCTTTGACTTGGCCTGTTTTTGCGTTTCAGTATTTAGCTATTTTTGGTTACACAAAGGGACCTGAGTGGAAAGGATTTTATGACGAAATCTTTGATGGCGAGTACTATTTATTGCCTGCACGCAGGAAATTGATGATTTTGCAAATCCTCTGTGATGATGTTTTGGCATCTGAGGAGTTTAAAGCTGAAATGAACATGCGTGAAGAATCAGAGGTTGGGATTGATTATGATAATGAGGATAGCCTTCCTACTGAAATTGGGCCAAGAAGAGTTCATCCAAGATATTCCAAAACTACTGCCTGCAAGGATAGTGAAACTAAGAAGTATGTTTCAGAATTGAATGCTGAGGATATTGATGGAAATGGAGATGAATGCCGCCTATGTGGCATGGATGGGACTTTGCTTTGTTGTGATGGTTGTCCTGCTGTTTATCATTCAAGGTGTATTGGTGTGATGAAGATGCATATACCAGATGGGGAATGGTACTGTCCAGAGTGCAAAATAAATATGATTGGGCCAACAATTGCACGGGGAACATCACTTAAAGGGGCTGAAGTATTTGGAAAGGATTTGTATGGGCAAGTTTTCATGGGTAGTTGCGACCACTTACTGGTGCTCAATGTCAACAGTGATGAATTTTGTCTTAAATACTACAATCCGAATGACATTCCTAAAATTCTCCAAGTCCTTTATGCATCGGAGCAACTTAGACCTATATACAATGGTATTTGCATGGCGATGTTAGAATATTGGAATATTCCAGAGAACTTCTTACCTCTTTGTGTCACAAGTGTACCACAAGTATACTTAACAAATACGAAAGCAGATGTGAAACTTCTTCCCATGATTGAAGAAGAGCATCAAGCTGTAAGTTCGGTGAAGGCAGAATACAGTTTAACATATGCAAATGGAATTTATAGTGATAATTTGGTGCCATCTCTTGATGCTTCTTTGGTTACAACTTGTGTTCCTGCTCCTGGAAGCAGTGACGATACAAAAACTAATGTGAATTTGAAGCTTCATGAGGAAACTACAATGAATTCAATAGTTTCAACTGTTAACCATCAGCCCAATCCAAAATATGAAAATTCTGTTAACAAGTCAGCTGCAGTAGGCCCTGCTAAGTGCTCCTTTGTAAGCAGCCAATTTAATAATTATGGGCACACAAATGACAGAAGGTTGCCTATGAATTTGTCTTTGCAAACTAAAGGTGACAAATCTGGTTTTGGAAAGTGCAAAGGCAGTTTAACTAATGATTTTGTGTACATTGGTTGCTCCTATAAACCACAGTCATACATTAATTGCTATATGCACGGTGATTTTGCGGCATCTGCTGCTGCTAACCTGGCCGTTCTTTCTTCAGAGGATTCTAGATCAGAGGGTCATGTATCTGACAACTTGGCGAAAGCAACATCTGGAAACAGTTATTTGCTTGCAAAAGCATTCTCGCAAACAGCTTCACGCTTCTTTTGGCCAAGTTCTGAAAAGAAGCTTGTAGAGGTTCCAAGAGAGAGGTGTGGCTGGTGTCTTTCTTGTAAAGCCCTTGTTTCAAGCAAGAAAGGATGCATGTTAAATCATGCTGCTCTAGGTGCCACCAAAAATGCAATGAAAATCCTTTCTGGTCTTGCTCCTGTAAAGATTGGAGAAGGAATCATCCCTAGCATTGCAACTTATGTTATATATATGGAGGAAAGTTTACGAGGTTTAATAGTTGGGCCCTTTTTAAGTGAATGTTATAGAAGGCATTGGCGTAAACAAGTGGAAAGGGCCACATCATTTAGTGATATAAAACCCCTTTTACTCAAACTTGAGGAGAACATTCGAACAATTGCTTTTTGTGGGGACTGGGTGAAGTTGATGGATGATTGGTTGGCTGAATTTTCCACAATTCAAAGTGCTGCAGTTACGCCTGGAACTACACAGAAACGTGCAACATGTGGGAGGCGTAAGAAACAGTTATCTAGCAATAAAGTTACAGCTGGTGCTTGTCCTGAAAATTTTGTATGGTGGCATGGCGGGAAATTTACCAAATCTGTATTTCAGAAAGCTGTTTTGCCAAAATCCATGGCCAGAAAAGCAGCCCGACAAGGTATTCTAGTCCGATATCTAGATTTTCATATCAGATGGAGTGATCTGATTCGTCCTGAGCATAACCTCCTGGATGTGAAAGGTCAAGATACTGAAGCATCTGCTTTTAGGAATGCAAATATTCATGAGAAAAAGATCGTGGAGGGCAAAACTTTGTATAGAGTAGCCTTTGGAAGCCAAAGACATCTTCCTTCTCGGGTAATGAAACATGTTGAAATAGAGCAAGGTCCTGAAGGAAAGGAAAAATATTGGTTTTCTGAGAAACGCATTCCTTTATATTTGGTAAAAGAGTATGAGATGCGCAGTGGAAAAATGCTATCTGATAAAGAGTACCTGCACATTACATCTCAGTTGCTCAAAAGGCGGTTGAAAGCTACCTATAAGGACATCTTTTTTTACCTTACCTGCAAGAGAGACAAGTTGGACATGCTATCATGCTCTGTATGTCAGCTGGGGGTTTTAATTGGGAATGCTATCAAGTGCAGTGCCTGTCAAGGTTATTGTCACACGGGTTGTTCAGTGAGTTCAACTGTCTCTACATGTGAAGAAGTTGAGTTCTTGGCCACATGCAAACAATGTCATCATGCCAAATTACTTACTCAAAAAGAGTCTTGTAACGAGTCTCCAACTAGTCCCTTACTCTTAGAAGGACAAGAACACAGCACTTCAGCAGTTCTGAATGGACCAAGGCCTAAATGTGATGGTCAAGGATTGATGTCTTCTCAGACAAGGAATAGTCGATCTGACATGAAACGAGTTGCTTCTGATTTCACTCTGGAAACAAAAGGCCGTAGCAAAAGTTGTTCTTGGGGTATTATATGGAAAAAGAAGAACAACGAAGATACTGGTTTTGATTTCAGGCTCAAGAGCATTCTTCTAAAAGGAGGTTCAGGCCTTCCTCAATTGGAACCTGTCTGTCGCTTGTGCCAGAAACGATATAGGTCTGATCTAATGTATATCTGCTGCGAAACATGTAAACATTGGTATCATGCTGAAGCCGTTGAACTTGAAGAGTCCAAACTTTTTGATGTGCTGGGCTTCAAATGTTGCAAGTGTCGTAGGATAAAGTCCCCTGTCTGTCCTTTCTCTGATTTTTTGTACAAGACTCAAGAAGGCAAGAAGTCTTCAAGGACTTCAAAGAAAGAGTGGTTTGGGGGAGATTCTGATTCTGGTACGCCTATTGACAGGAGAACAAGTGAGCCCACAACTCCTATCTGTCCTGCAGTGGATGTCTCTAGACAAGACAATGATCCTATGCTGTTCTCCCTTTCAAGTGTTGAGCTGATTACAGAACCCGAGTTAGATGCAAATGTTGTGGGTAATACTGTCTCTGGGCCAGGACTTCAGAAATTACCGAAACATGAGACGCAGAATAATGATTCTTTTAGAGGTAATCTTCATGCTGAGTTCTCAACCAGCAATGAAATGGTTTCCAAATCAGTAAAAGATTTATCTCCTTCTGTAGAACATGGCTCTGGGGACTGCAATCTTCTTAAGGACCCTGAAATTGTAAATTATGACGAGTTCGTGGATTTTGAACCTCATACCTACTTCTCTCTGACTGAACTGCTCCACTCAGATGAGAATATTCAATCTGAGGAAGCTAATGCATCTCGGGTTTCAGGATATCCGAAAAAATCTTGTACGTTAGGTGTTCCTGAAGAATGCGGAACTGTTAATTTTGCATCCAACTGTGAGCCTACAAATTTGTTACGAGGAAATGTTAATAGTTGTCGGCAATGTTCTCAAAAGGAACCGCCCCCTGATCTCCATTGTCAGATTTGTAGGATTTGGATTCACGGCCAATGTTCACCTTGGGTTGAATCGCCATCTCGGCTTGCAAGTTGGAGGTGTGGTGATTGCCGGGAATGGCGATAG 4545 0.4233 MEPPVVRSRGRPRKRRREEDGTISSDPKTFPEAKKAPPVALVGRYVLKEFRRNTVLLGKVVRYERGLYRVVYESGGFEDLASTVIRRILLLDSYFDDDLIRRKGELEESVLPKIAVEPERGSSELRGDLSVENEEERNETDDESCGVSRDLSSDAETQIPPPPTLPPSSGTIGVPESCVLNLLSVCIDWSLLDALTWPVFAFQYLAIFGYTKGPEWKGFYDEIFDGEYYLLPARRKLMILQILCDDVLASEEFKAEMNMREESEVGIDYDNEDSLPTEIGPRRVHPRYSKTTACKDSETKKYVSELNAEDIDGNGDECRLCGMDGTLLCCDGCPAVYHSRCIGVMKMHIPDGEWYCPECKINMIGPTIARGTSLKGAEVFGKDLYGQVFMGSCDHLLVLNVNSDEFCLKYYNPNDIPKILQVLYASEQLRPIYNGICMAMLEYWNIPENFLPLCVTSVPQVYLTNTKADVKLLPMIEEEHQAVSSVKAEYSLTYANGIYSDNLVPSLDASLVTTCVPAPGSSDDTKTNVNLKLHEETTMNSIVSTVNHQPNPKYENSVNKSAAVGPAKCSFVSSQFNNYGHTNDRRLPMNLSLQTKGDKSGFGKCKGSLTNDFVYIGCSYKPQSYINCYMHGDFAASAAANLAVLSSEDSRSEGHVSDNLAKATSGNSYLLAKAFSQTASRFFWPSSEKKLVEVPRERCGWCLSCKALVSSKKGCMLNHAALGATKNAMKILSGLAPVKIGEGIIPSIATYVIYMEESLRGLIVGPFLSECYRRHWRKQVERATSFSDIKPLLLKLEENIRTIAFCGDWVKLMDDWLAEFSTIQSAAVTPGTTQKRATCGRRKKQLSSNKVTAGACPENFVWWHGGKFTKSVFQKAVLPKSMARKAARQGILVRYLDFHIRWSDLIRPEHNLLDVKGQDTEASAFRNANIHEKKIVEGKTLYRVAFGSQRHLPSRVMKHVEIEQGPEGKEKYWFSEKRIPLYLVKEYEMRSGKMLSDKEYLHITSQLLKRRLKATYKDIFFYLTCKRDKLDMLSCSVCQLGVLIGNAIKCSACQGYCHTGCSVSSTVSTCEEVEFLATCKQCHHAKLLTQKESCNESPTSPLLLEGQEHSTSAVLNGPRPKCDGQGLMSSQTRNSRSDMKRVASDFTLETKGRSKSCSWGIIWKKKNNEDTGFDFRLKSILLKGGSGLPQLEPVCRLCQKRYRSDLMYICCETCKHWYHAEAVELEESKLFDVLGFKCCKCRRIKSPVCPFSDFLYKTQEGKKSSRTSKKEWFGGDSDSGTPIDRRTSEPTTPICPAVDVSRQDNDPMLFSLSSVELITEPELDANVVGNTVSGPGLQKLPKHETQNNDSFRGNLHAEFSTSNEMVSKSVKDLSPSVEHGSGDCNLLKDPEIVNYDEFVDFEPHTYFSLTELLHSDENIQSEEANASRVSGYPKKSCTLGVPEECGTVNFASNCEPTNLLRGNVNSCRQCSQKEPPPDLHCQICRIWIHGQCSPWVESPSRLASWRCGDCREWR* 1515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00520 1514 SUPERFAMILY FYVE/PHD zinc finger 1190 1247 IPR011011 -
Lapu5g00520 1514 SMART PHD_3 1034 1083 IPR001965 -
Lapu5g00520 1514 SMART PHD_3 317 360 IPR001965 -
Lapu5g00520 1514 SMART PHD_3 1466 1511 IPR001965 -
Lapu5g00520 1514 SMART PHD_3 1194 1242 IPR001965 -
Lapu5g00520 1514 CDD PHD2_CHD_II 318 359 - -
Lapu5g00520 1514 MobiDBLite consensus disorder prediction 1 34 - -
Lapu5g00520 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 309 364 IPR013083 -
Lapu5g00520 1514 CDD PHD_SF 1194 1241 - -
Lapu5g00520 1514 MobiDBLite consensus disorder prediction 1267 1298 - -
Lapu5g00520 1514 ProSiteProfiles Zinc finger PHD-type profile. 315 362 IPR019787 -
Lapu5g00520 1514 MobiDBLite consensus disorder prediction 121 170 - -
Lapu5g00520 1514 PANTHER PHD FINGER FAMILY PROTEIN 186 890 - -
Lapu5g00520 1514 Pfam WSTF, HB1, Itc1p, MBD9 motif 1 215 258 IPR028942 -
Lapu5g00520 1514 ProSitePatterns Zinc finger PHD-type signature. 318 359 IPR019786 -
Lapu5g00520 1514 Pfam PHD-finger 318 360 IPR019787 -
Lapu5g00520 1514 SUPERFAMILY FYVE/PHD zinc finger 310 366 IPR011011 -
Lapu5g00520 1514 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1190 1248 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00520 Lapu-Chr5 4699981 4707036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00520 202 447 EF-hand Containing Proteins AT5G22760 47.407 2.82e-72 264
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu5g00520 PHD 5.7e-08 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00520 - - gmx:100808614 2273.43