Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00512 ATGGCGGAGGACCGGAGTGAGGTGAGTGATTACAGTTCGGAGGACGAAGGAACTGAGGATTACAGGCGCGGAGGGTACCATGCGGTTCGGATTGGTGACACTTTCAAGAATGGGTGCTATGTGGTGCAGAGCAAGCTTGGTTGGGGTCATTTTTCCACTGTGTGGCTCGCTTGGGACACTAACAAATCGCGATATGTTGCCTTAAAAATTCAGAAGAGTGCTCAGCATTACACTGAAGCGGCAATGGATGAAATAAAGATTCTCAAACAAATTGCTGATGGGGATCCAGATGACAAAAAATGTGTTGTAAAGCTTTTAGATCACTTTAAGCATTCAGGGCCTAATGGCCAGCATGTTTGTATGGTTTTTGAATTCCTTGGTGATAATCTTCTCACCCTTATCAAGTACAGTGATTACCGAGGTGTTCCCCTTCCTATGGTCAAGGAAATTTGTTTCCATATTTTGGTGGGTTTGGATTACTTGCACCGTGAGCTTTCTGTAATACACACTGATTTGAAGCCTGAGAATGTCCTGCTTTTGTCTCCAATAGATCCATCTAAGGATCCTAGAAAATCAGGTGTTCCACTTATCCTTCCAAACACGAAGGATAAGGCTGTGACAAAAAATGGGACAACAATAGCCAATAAGAGTGTGAATGGAGATCTGACCAAGAACCAGAAAAAGAAATTGCGAAAAAAGGCTAAAAAGGCAGCCCAGGGAAGGGAGCATGTCGAGGAAGCTGAGGAGGATTCCAAAGCACCTGATCAGCAAGATGATTGTAGTAATGATGTGAAACCAAGTGTAGAATCTGGTGACAATAAACCTAATAGTCCTGTGAGTAAAGATGAATCGACAAAGACTTCAGAGAGTAAGGATGTTCCTGAAGGAAGCCATGGTCATAGGAGAGGTAGCCGCTCTACAAGAAAGAAGTTGCTTGCATCTGTCGATCTTAAGTGCAAGCTGGTTGATTTTGGTAATGCTTGTTGGACCTATAAACAATTCACAAATGATATTCAGACAAGGCAGTATAGGTGTCCTGAAGTTCTTCTTGGATCTAAATACTCAACTCCAGCAGATCTATGGTCCTTTGCTTGCATTTGCTTTGAGCTTGCCACTGGCGATGTTCTTTTTGATCCTCATAGTGGTGACAACTATGATAGGGACGAGGATCATCTAGCATTGATGATGGAACTTCTTGGGATGATGCCTCGCAAGATTGCACTTGGTGGCCGCTATTCCCGAGATTTTTTCAACAGATATGGTGATTTGAGACACATCCGTCGATTGCGTTTCTGGCCTCTTAATAAGGTGATGATGGAGAAGTATGATTTCAGTGAACAAGATGCAAGTAGCATGGCTGACTTCCTTCTTCCATTACTTGATTTTGTCCCTGAAAAGAGGCCGACTGCTGCACTCTGCCTTCAGCATCCATGGTTCAGTGCAGGTCCCCGGACTCTTGAGCCCTCAGTGGCTACTGTGCAGCATGCTGCAATTGACGGGGAAATATCTGAAAAGATGCAGAGGGAAAAAGCTGAGCAGGAGGCTGTGGAAGTTGGAATGGGGAATATGGCCATAGATGGAAATCCAAAGCAACTCTAA 1599 0.4422 MAEDRSEVSDYSSEDEGTEDYRRGGYHAVRIGDTFKNGCYVVQSKLGWGHFSTVWLAWDTNKSRYVALKIQKSAQHYTEAAMDEIKILKQIADGDPDDKKCVVKLLDHFKHSGPNGQHVCMVFEFLGDNLLTLIKYSDYRGVPLPMVKEICFHILVGLDYLHRELSVIHTDLKPENVLLLSPIDPSKDPRKSGVPLILPNTKDKAVTKNGTTIANKSVNGDLTKNQKKKLRKKAKKAAQGREHVEEAEEDSKAPDQQDDCSNDVKPSVESGDNKPNSPVSKDESTKTSESKDVPEGSHGHRRGSRSTRKKLLASVDLKCKLVDFGNACWTYKQFTNDIQTRQYRCPEVLLGSKYSTPADLWSFACICFELATGDVLFDPHSGDNYDRDEDHLALMMELLGMMPRKIALGGRYSRDFFNRYGDLRHIRRLRFWPLNKVMMEKYDFSEQDASSMADFLLPLLDFVPEKRPTAALCLQHPWFSAGPRTLEPSVATVQHAAIDGEISEKMQREKAEQEAVEVGMGNMAIDGNPKQL* 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00512 532 Gene3D Phosphorylase Kinase; domain 1 16 122 - -
Lapu5g00512 532 PANTHER PROTEIN KINASE DOMAIN-CONTAINING PROTEIN-RELATED 10 503 - -
Lapu5g00512 532 Coils Coil 227 250 - -
Lapu5g00512 532 ProSiteProfiles Protein kinase domain profile. 40 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00512 532 CDD STKc_SRPK 29 479 - -
Lapu5g00512 532 ProSitePatterns Serine/Threonine protein kinases active-site signature. 167 179 IPR008271 GO:0004672|GO:0006468
Lapu5g00512 532 ProSitePatterns Protein kinases ATP-binding region signature. 46 69 IPR017441 GO:0005524
Lapu5g00512 532 MobiDBLite consensus disorder prediction 260 283 - -
Lapu5g00512 532 Gene3D Transferase(Phosphotransferase) domain 1 123 480 - -
Lapu5g00512 532 MobiDBLite consensus disorder prediction 204 221 - -
Lapu5g00512 532 FunFam CMGC/SRPK protein kinase 26 125 - -
Lapu5g00512 532 SMART serkin_6 40 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00512 532 MobiDBLite consensus disorder prediction 284 301 - -
Lapu5g00512 532 MobiDBLite consensus disorder prediction 238 259 - -
Lapu5g00512 532 Pfam Protein kinase domain 40 179 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00512 532 Pfam Protein kinase domain 314 479 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00512 532 SUPERFAMILY Protein kinase-like (PK-like) 35 490 IPR011009 -
Lapu5g00512 532 MobiDBLite consensus disorder prediction 181 307 - -
Lapu5g00512 532 FunFam Serine/threonine-protein kinase SRPK-like protein 309 479 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00512 Lapu-Chr5 4630914 4634905 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00512 6 531 EF-hand Containing Proteins AT5G22840 69.737 0.0 740
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Lapu5g00512 Pkinase 4.1e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00512 K08832 - gmx:100791829 989.564
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00512 5 4630914 4634905 Lapu5g00512 5 4630914 4634905 ECH