Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00507 ATGGCTGTTGCTGGTATGCATAATGTGACTGCTCTTGAATCTACTTTCCTGAGGGAATCCCTTTCTCAGTCATCTGGGAGCCAAGGAGATGGAGGGAGGGGAGGCACCCGGTCGTCTTCGGTCTTGCAAATGTGGAGAGAGCTTGAGGATGAGCAGGTAGTAAGACAAGTTCAAGGAAGACCTGGGGAGGTTTTACTTCAACAAAGGAGTGGTGAGTTGGTTGTGGACCCGTCGCAGGAAAATATGCCAGATAGCAACCAAAGAGAAGGGCATGTGATAGAGGATGCAGGTTTGGGTGAGAATGATTCTGAGACCTGGTCACAAAGTCAGAATGAGTTCCATGACGAACATGAGGAATTAAACAATTCTATCCACGAAAACTCCTCTGATTTTGGAGAAGTTGAAAGGGAAAGAGTGAGACAAATATTCAGAGAATGGATGAATAGTGGTTCTAGGGATCGTGTATCGAATAATTCCCAAGGAAACAGGGGAGAATGGCGCGGGGAAACTGAGCAGGAAAGGGTGAGTATCATAAGGGAGTGGGTACGGATGAGTAGCCAACAGAGAGTTGTTTCTTCTGGGGAAAATAGGGAAGAACAATCTTCTGAAACTAGCACCCAAATTGAATGTGTCCGTGACGGATTTGTTGTTAATCAGAACGAAGGCCAAACTGAGCATACACGGAGGGGAATTCGTAAATTATGTGGCCGACAGGTACTGCTTGATATGCTTAAAAAGGCTCAGATGGAAAGGCAAAGAGAAGTTCAGGAATTGTTGGACCATCGGGTTGTATCTCATTTTCCGCATCGTAATCGTATTCAGGCCTTGCTTAGAGGCAGGTTCTTGAGAAATGATAGATCGATTGATAATAACAGGTCCACTTCCATTGCAGAAAGTGAATTAGGCTTATTGAGACAGAAGCAGACTGTATCAGGTTTAAGGGAAGGATTCTTTTTTAGAAAGGACAATTTTGGTTGTAGTCAAGAAACCAGTAACCTATCTGATACGTCTTCCGAGAGTTATATTGATGTTAATGCAATTGAACAAACTGGAGCTAGCAGTTCACGAGCAGTCCCAACTGTACATTTTGAACAATCTGGGCATAATAACAATGGAAGTGACGGACTTGAGATACCATGTGATCAGATTTGTTCACAAGGAACCCCTTGTGAGGTATTAGATTGGCAAGGCTCTGCCGCCCATGTAGAAACAAGAGATTGGGAATCATCCTCCAGTATCAGGGTTGAAAGAGGAGATGGCACTGGACTAACTGTTGCTATGGTGCCAACCGAAGATCCTTCTAATGACCTTATCCAACCAAGCTTGCAAATTGAAGGTACAGAGGATGACAATATGCAAGAGTTAAGCGAGGTACATACTGAGCAATCTCAGTGGGGAGATATAACTAACGATGAAAGCAATTTATCAAATCAGGATGATCGTGTATATAGCAATATCGTTGGTGATGTAGATTTGACTGAATCTGTTGCTTTGGAAGTAGAACAACAGGAGGAAGTTATTATTGAAAATGACAGAAGTGACTGGCATCAAAATGTGGATGATCATCAGCTCAGTAACACAACAAATGAATGGTCCCAAAACATATTGGGTAGCGAAGATGGAGAAAATTCTCGTATGCAAGAGCAAGAAGCCCCTGAAGTGTGGCAAGAGGATGGTGGCTTTCAAGAGGCTGTGGAAATTTGGTTAGGAGGACCTTCTGATAGTGAAGTAGCTCCGGTTGGTAGAATTCATGGGTTTTATTTTCCCGAAGATGACAATGTGTACAGTGTTGAACTCAGGGAATTGCTAAGTAGGAGAAGTGTCTCAAACCTCCTTCGCAGCAGTTTTCGTGAAAGTCTTGACCAGTTGATACAATCGTATGTTGAAAGGCAAGGTCACGCTCATGTTGAATGGGAGCTGCAAGAAACAACCCCTTCTTCTCCCTTGGCAGAAGAAGAATCAGGGCAACAGACTAGGGATCCAGTTGTTGGTCCTCAGGGTACTGCTAATAGCTCACTTGACCACCGCCCCTTGCCACCAACACCTCCGCCTCAGCCTATATGGGATCGGCACTCTCGTCATGACAATTGGTCACAGAGTGACTTAAATAATCAGCGCCTAGGAACTGTGCGTTCATTTGCGGGACATAACTGCTTTTCTTTAGCTGATGAGTGGGATATTGTTAATGACTTGAGAATTGACATGGTTAGGCTACAGCAAAGGATGAATAATATGCAAAGAATGCTGGAGGCCTGTATGGATATGCAGCTTGAGTTACAACGCTCAATAAGACAAGAAGTCTCTGCTGCCTTAAATCGCTCAATTGGTTCATCAGCTAATAGTCTTAGATTCGTCACAGGTATACATGACCATGTTTCACCAGACGATAAATCTAAATGGGAATGTGTGAGGAAAGGACTTTGTTGTATATGCTGTGAAAGCAATATTGATTCTTTGTTGTACAGATGTGGGCACATGTGCACATGTTCAAAATGTGCGAACGATTTGCACCAAAGTAGAAGAAAGTGTCCAATGTGTCAAGCACCAGTGGTGGAAGTGATACGTGCTTATTCTATACAATAG 2583 0.4352 MAVAGMHNVTALESTFLRESLSQSSGSQGDGGRGGTRSSSVLQMWRELEDEQVVRQVQGRPGEVLLQQRSGELVVDPSQENMPDSNQREGHVIEDAGLGENDSETWSQSQNEFHDEHEELNNSIHENSSDFGEVERERVRQIFREWMNSGSRDRVSNNSQGNRGEWRGETEQERVSIIREWVRMSSQQRVVSSGENREEQSSETSTQIECVRDGFVVNQNEGQTEHTRRGIRKLCGRQVLLDMLKKAQMERQREVQELLDHRVVSHFPHRNRIQALLRGRFLRNDRSIDNNRSTSIAESELGLLRQKQTVSGLREGFFFRKDNFGCSQETSNLSDTSSESYIDVNAIEQTGASSSRAVPTVHFEQSGHNNNGSDGLEIPCDQICSQGTPCEVLDWQGSAAHVETRDWESSSSIRVERGDGTGLTVAMVPTEDPSNDLIQPSLQIEGTEDDNMQELSEVHTEQSQWGDITNDESNLSNQDDRVYSNIVGDVDLTESVALEVEQQEEVIIENDRSDWHQNVDDHQLSNTTNEWSQNILGSEDGENSRMQEQEAPEVWQEDGGFQEAVEIWLGGPSDSEVAPVGRIHGFYFPEDDNVYSVELRELLSRRSVSNLLRSSFRESLDQLIQSYVERQGHAHVEWELQETTPSSPLAEEESGQQTRDPVVGPQGTANSSLDHRPLPPTPPPQPIWDRHSRHDNWSQSDLNNQRLGTVRSFAGHNCFSLADEWDIVNDLRIDMVRLQQRMNNMQRMLEACMDMQLELQRSIRQEVSAALNRSIGSSANSLRFVTGIHDHVSPDDKSKWECVRKGLCCICCESNIDSLLYRCGHMCTCSKCANDLHQSRRKCPMCQAPVVEVIRAYSIQ* 861
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00507 860 Coils Coil 728 755 - -
Lapu5g00507 860 Pfam Zinc finger, C3HC4 type (RING finger) 805 852 - -
Lapu5g00507 860 MobiDBLite consensus disorder prediction 150 170 - -
Lapu5g00507 860 ProSiteProfiles Zinc finger RING-type profile. 808 847 IPR001841 -
Lapu5g00507 860 MobiDBLite consensus disorder prediction 150 165 - -
Lapu5g00507 860 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 795 858 IPR013083 -
Lapu5g00507 860 CDD mRING-HC-C3HC5_NEU1 808 857 - -
Lapu5g00507 860 SUPERFAMILY RING/U-box 807 853 - -
Lapu5g00507 860 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 445 860 - -
Lapu5g00507 860 MobiDBLite consensus disorder prediction 643 675 - -
Lapu5g00507 860 MobiDBLite consensus disorder prediction 643 700 - -
Lapu5g00507 860 MobiDBLite consensus disorder prediction 19 42 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00507 Lapu-Chr5 4551790 4558464 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00507 808 854 C3H Transcription Factor Family AT3G06140 38.298 3.76e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00507 - - gmx:100804887 1338.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00507 5 4551790 4558464 Lapu5g00507 5 4551790 4558464 ECH
Lapu5g00507 5 4551790 4558464 Lapu11g00392 11 7056122 7061590 PCT