Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00506 ATGGCCAAGGGCACCGATTCCGACGAGTTCGTCTTGCTTTCTAGGGTCCGGACTGGTCTGAAGAGGGAGTTCGCGTTCGCAATGAAGGCCCAATCTGAGATCTGCGGCGGTTCTCTGGGCCGAACGCGGGCCAGCAAGAACCGGCCCGAGGCCCCTGTTCAGACTCCATCTGCCCGGAAACGGTCCAGGAAGACCGTGGAGCCGAAAACGTCGGAGGACGTCTTGAGCGAGGAAGAGGCTAAGAGCGACGTGGTGGATCTTCAGAGCGACGATGAACCGAAGAATAATCACGCCGGAGAATCAGAATCTGCGGCAATGCTGGTTTGTGAAGAGGAAACGAAGAGTGATGTGGCGATAGAAAATATTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAGCTGTTATCAGCGAAGAGGAGCCGAAGGTGTTGGAAGCTGTTATCAGCGAAGAGGAGTCAAAAGTGTTGGAAACTGTAAAGGAGGAACCGAAGGCGTTGGAAATTGTTATGGGCGAAGAGGAGCCGAGGGTGTTGGATAGTGCTGTCAACGAGGAGGAACCTGTTGTGGCTGAGACGTTGAAGGAAGAGGTTGTGGATGAGATGACACGACCTCTTGGCGAAATTAACGAGGAAGCGGAGAAGGGTGTTTCAGGGGATAAGGATCCCAGTGGGGAAACCGTTGTTTTGGAGAATGGTGATGACAAGGGGAAGAAGAGAATGAAAAAGAGGCTGGAGAGGCCTCAGACTGTGAGAAGGTTTACGCGGTCGGCATTGAAGGAAAAACCTGAGGAAACAAATGATGAGAAACATGTTGGTGTAGTTGGACTTGATGATGGTATTAAGAGGGAAACAGAAACTGAGGCTTCTGTGTTAATGACTACTCCTATTTCGGGACGATTTTCGAATTCTAGGTTGAGGAAGTTTCCTACTAAGTTGAAGGATCTTCTGGCTACGGGGATTCTTGACGGATTGCCAGTGAGGTACATGAAGGGAACAAAGGCACGAAGAAATGGAGAAACAGGGCTTCAAGGAGTGATTCAAGACTCTGGGCTTTTGTGCTTTTGTGAGAGTTGCAAGGGAGTTGAGGTTGTCACACCCACTGTGTTTGAGCTGCATGCTGGCAGTGCAAATAAACGTCCCCCAGAGTATATTTACATGGATTATGGGAATAATAGTGGAAATAACCTCCGTGATGTTATGAATGCCTGCTGCGATTTGCCATTGGAGTCAATGGAGGAAGCCGTCCAAAAACTACTTGGTGGCTTCACTATGAACAAGTCTTCCATCTGTTTGAACTGCCGAGGACCATTCAAAGGTGTGTCAAAGCTAGTATGTGATTCTTGCATTTTAAGCCCCCCTCAAACAGCCACAGCTAGTAGCAAAAGGATTTCACCACCAGTTCAACCAAGATCACCGGAGCCAGTAATGGTTAAAAAATCTTTAGACAGTGAGATGCAGCCAAATTCATTAGACAATGGGGTGCAGTTAAATTCACTATATAATGGGGTGCATCCAAACTTGTTAAACAATGAGGTGCCGCCAAACTCTCTAAATAATGGCGTGCTGCCAAGCTCATTAAACAATGAGTTGAAGCCTACTCCATCAAACAGTGGAATGAAGCCAAATTCGTTAAAGAATGGGATGAAGCACAGTGCATCTCGTGGTAAGAGTCAGGGAAGACTAACTAGGAAGGATCTGCGCTTGCATAAGTTGGTATTTGAAGGAGATGTTTTGCCAGATGGAACTGAAGTAGCCTACTATGCTCATGGACAGAAACTGTTAGTTGGTTACAAAAAGGGATATGGAATTTTTTGTACCTGCTGCAACTCTGAGGTCAGTGCCTCTCAGTTTGAAGCGCATGCTGGCTGGGCATCTCGACGAAAGCCTTACCTGCACATTTACACATCTAACGGAATCTCTCTCCATGAGTTGTCCATCTCTTTATCAAAAGACCGCAGATTTTCCAACAATGATAATGATGATCTCTGCATCATATGTGAAGATGGAGGGGATCTTTTGTGTTGTGATGGATGCCCTAGAGCTTTTCACATAGACTGTGTCCCTTTACCATGTATTCCTAGTGGTACTTGGTATTGTAAGTATTGCCAGAATGTTTTCCAGAAAGATAGGCAGGGGCAACATAATGTGAATGCTCTGGCAGCTGGAAGGATTGAAGGCACTGATATTTTGGAACAGATGAACCCTAGATGTATTCGTGTTGTCAAAACTGTAGAAGTTGACCATGGTGGATGTGCCTTGTGCAGTCGTCACAATTTCAGTAAAAGCTTTGGCCCTCGGACAGTAATTATTTGTGATCAGTGCGAGAAAGAATATCATGTTGGATGTTTGAAGGATCATAACATGCAGAACCTTGAGGAATTGCCTGAAGGGAATTGGTTTTGTAGCACAGCTTGCAATCAAATTCATTCTGCCCTGGTGGATTTGGCGGCTTGTGGGGAAAAGAGTATTCCAGATTCCCTTTTATGTTTGATAAAAAAGAAGCATGAAGAGAAAAGTGTAGACATTGGAGGTGGCCTTGACGTTAAATGGAGGGTTATAAATTGGAAACTAGATGATTCTGTCGAAAATAGGAAAAGGCTTTCAAAGGCTGTTGCTATCTTCCATGAAAGGTTTGATCCTATAGTTGATTCAACATCTGGCCGAGATTTCATTCCGACCATGTTGTTTGGAAGGAACATTCGGGGTCAGGATTTCAGTGGAATGTACTGTGCAGTGCTCACTGTCAATGGAGATATTGTGTGTGCTGGAGTATTTCGTGTGTTTGGGTCAGAAATTGCAGAGCTTCCATTGGTGGCAACAACTTCTGATCAGCAAGGACAGGGTTATTTTCAGTGTCTATTTTCTTGTATTGAGACATTACTGGGATCTTTGAATGTGAAAAATCTTGTCCTACCAGCTGCTGATGAAGCAGAATCGATATGGACCGGTAAATTCGGGTTTACAAAGCTAGCTCAAGACGAGATAAACAAATATAAGAAATTTTATCGCATGATGATATTTCAAGGGACCTCAGTGTTACATAAGCCTGTTCTTGCACTCTGA 3060 0.4513 MAKGTDSDEFVLLSRVRTGLKREFAFAMKAQSEICGGSLGRTRASKNRPEAPVQTPSARKRSRKTVEPKTSEDVLSEEEAKSDVVDLQSDDEPKNNHAGESESAAMLVCEEETKSDVAIENIISEEEPKVLEAVISEEEPKVLEAVISEEESKVLETVKEEPKALEIVMGEEEPRVLDSAVNEEEPVVAETLKEEVVDEMTRPLGEINEEAEKGVSGDKDPSGETVVLENGDDKGKKRMKKRLERPQTVRRFTRSALKEKPEETNDEKHVGVVGLDDGIKRETETEASVLMTTPISGRFSNSRLRKFPTKLKDLLATGILDGLPVRYMKGTKARRNGETGLQGVIQDSGLLCFCESCKGVEVVTPTVFELHAGSANKRPPEYIYMDYGNNSGNNLRDVMNACCDLPLESMEEAVQKLLGGFTMNKSSICLNCRGPFKGVSKLVCDSCILSPPQTATASSKRISPPVQPRSPEPVMVKKSLDSEMQPNSLDNGVQLNSLYNGVHPNLLNNEVPPNSLNNGVLPSSLNNELKPTPSNSGMKPNSLKNGMKHSASRGKSQGRLTRKDLRLHKLVFEGDVLPDGTEVAYYAHGQKLLVGYKKGYGIFCTCCNSEVSASQFEAHAGWASRRKPYLHIYTSNGISLHELSISLSKDRRFSNNDNDDLCIICEDGGDLLCCDGCPRAFHIDCVPLPCIPSGTWYCKYCQNVFQKDRQGQHNVNALAAGRIEGTDILEQMNPRCIRVVKTVEVDHGGCALCSRHNFSKSFGPRTVIICDQCEKEYHVGCLKDHNMQNLEELPEGNWFCSTACNQIHSALVDLAACGEKSIPDSLLCLIKKKHEEKSVDIGGGLDVKWRVINWKLDDSVENRKRLSKAVAIFHERFDPIVDSTSGRDFIPTMLFGRNIRGQDFSGMYCAVLTVNGDIVCAGVFRVFGSEIAELPLVATTSDQQGQGYFQCLFSCIETLLGSLNVKNLVLPAADEAESIWTGKFGFTKLAQDEINKYKKFYRMMIFQGTSVLHKPVLAL* 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00506 1019 SUPERFAMILY FYVE/PHD zinc finger 742 803 IPR011011 -
Lapu5g00506 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 744 807 IPR013083 -
Lapu5g00506 1019 PANTHER AUTOIMMUNE REGULATOR 66 1016 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 60 98 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 453 473 - -
Lapu5g00506 1019 Pfam Tify domain binding domain 595 643 IPR032308 -
Lapu5g00506 1019 Pfam Tify domain binding domain 343 402 IPR032308 -
Lapu5g00506 1019 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 648 737 IPR013083 -
Lapu5g00506 1019 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 905 989 IPR016181 -
Lapu5g00506 1019 FunFam PHD finger family protein 846 1015 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 207 239 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 37 107 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 517 554 - -
Lapu5g00506 1019 Gene3D - 846 1014 - -
Lapu5g00506 1019 SMART PHD_3 749 804 IPR001965 -
Lapu5g00506 1019 SMART PHD_3 661 702 IPR001965 -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 517 560 - -
Lapu5g00506 1019 ProSiteProfiles Zinc finger PHD-type profile. 659 704 IPR019787 -
Lapu5g00506 1019 CDD PHD1_AIRE 661 701 - -
Lapu5g00506 1019 ProSitePatterns Zinc finger PHD-type signature. 662 701 IPR019786 -
Lapu5g00506 1019 SUPERFAMILY FYVE/PHD zinc finger 649 703 IPR011011 -
Lapu5g00506 1019 FunFam Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain 648 725 - -
Lapu5g00506 1019 MobiDBLite consensus disorder prediction 207 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00506 Lapu-Chr5 4529023 4536918 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00506 304 1016 PHD Transcription Factor Family AT2G36720 46.122 0.0 648
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00506 - - var:108333944 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00506 5 4529023 4536918 Lapu5g00506 5 4529023 4536918 ECH
Lapu5g00506 5 4529023 4536918 Lapu11g00395 11 7090000 7093691 PCT