Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00502 ATGTTGTCAGAAATATTAGACATGGAAGGCATGGCCACCGAGGAACTTGTCTCGTGTAACAACGATCCCACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCGCCCTGTCTTGTCACCGCCATGACTGCTACGGCCGCCGCCGCCATGACGTCAAGCTGTTCAAGTGCTTCTGGCGGCGGTGGTGGGTCGTTTTCATCTATCACCCTGGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTTGCACAAGGAAGAGGAGGAAGGGATCCTCTTCATCACAAGGACCTATGTGATGATGTCAAGACAGAGAAGGGTGGCAACAAAATTGAATTTTATGTCTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGACACAGGGCGAGTCACAAGAAACCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCGTTGCCACCACCACCACCACCGTCTTCGTCGTCGCAACTATTTAATTTTGAAGAAACAAAACAGAATCACGTGAAGATTAGCCCTTCAGTTTCGCTTCAATTAGGATGTGGAAATAATAGGGGTGGTTTAAGTTTCCATGGGAACAGGTCCAAGATTCACGAGTGTTCCATTTCCTCGGAATGTTCTAGAATTAGATCTCAACCTCCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAATTTCCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAGAAGCCAGGGTGGGAATTGGACGGAGAGGGGGAGAAAATTCCGACCCATACAAAGTTGATGCTCCCAAGAAAGATACTGCTGAGTCTCACACCACAAAGGATTGGGCCACATCTAGCTTCCAAAATCATCAAGGGCTTCAGATGTTCCCTGACCCTGAAGATTTGGTGTCACCCTCTGTGGAATCTGGCTCAGCTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTTAGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCTAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACATCAATGATGTTAACCTGCCAACAGATGGCTCTCACTACCCCTCCAGGTACTAATAATACTACTACATGCACCAACAAATTGCACCAGCTGAACAAGTTGCCTCACTCAAATTTTGGCACAAATAATAGAAGTGTGCTTGGTAACATAGGCATAGATATCGGTGACCATCATCAGGGTTTATTTTCTAGCACTGAGTCAGACGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGAAGATAATACCAATATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGCAATTAGTGAAAACAATATGATTATTAGTAGAGGTGGAGTACTGTCCCCAAGGGAAGAAGGGTATAGTCATAGAGGGCTTTCACCAAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTATACTCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACAAATGCTGCATTGAGCAACCCAATTAAGAATAAGGAGAAGTTAGAAGGGGAAAGAGAGTTTTTTATGAGCGTAAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCATGTCAAGTTCCAGCCATTAAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCTGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCGTGTGGCACTTCGTTTTCTAGGAAAGACAAACTCATGGGCCATGTTGCTTTGTTCGTGGGGCACCAACCAGCTATCTACAATATTGGTCTGTCATCGTACTCAGGAAAATTGGAGCAGCACACATTGCAAATGCAGATTGATGGTAGCTCAAGATGA 2112 0.4588 MLSEILDMEGMATEELVSCNNDPTNIAKGKRTKRRLRPLSPCLVTAMTATAAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGRDPLHHKDLCDDVKTEKGGNKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPPPPPPSSSSQLFNFEETKQNHVKISPSVSLQLGCGNNRGGLSFHGNRSKIHECSISSECSRIRSQPPGAGGRSPGLEVSISGESEFHDAVGCSGFGGMPLLEARVGIGRRGGENSDPYKVDAPKKDTAESHTTKDWATSSFQNHQGLQMFPDPEDLVSPSVESGSASHSSTLLFNLSILKDKVSEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEIIVTATSMMLTCQQMALTTPPGTNNTTTCTNKLHQLNKLPHSNFGTNNRSVLGNIGIDIGDHHQGLFSSTESDALDWFSESYNNNEDNTNISKTKEDDPSVAISENNMIISRGGVLSPREEGYSHRGLSPKNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKEKLEGEREFFMSVKPKRYSCPQEGCRWNQKHVKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAIYNIGLSSYSGKLEQHTLQMQIDGSSR* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00502 703 PANTHER PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 306 678 IPR044300 GO:0010044|GO:0010447
Lapu5g00502 703 MobiDBLite consensus disorder prediction 154 168 - -
Lapu5g00502 703 Coils Coil 703 703 - -
Lapu5g00502 703 ProSiteProfiles Zinc finger C2H2 type domain profile. 526 553 IPR013087 -
Lapu5g00502 703 Gene3D Classic Zinc Finger 619 669 - -
Lapu5g00502 703 Pfam C2H2-type zinc finger 121 147 - -
Lapu5g00502 703 SMART c2h2final6 526 548 IPR013087 -
Lapu5g00502 703 SMART c2h2final6 583 616 IPR013087 -
Lapu5g00502 703 SMART c2h2final6 122 144 IPR013087 -
Lapu5g00502 703 SMART c2h2final6 621 643 IPR013087 -
Lapu5g00502 703 Gene3D Classic Zinc Finger 520 583 - -
Lapu5g00502 703 ProSiteProfiles Zinc finger C2H2 type domain profile. 122 149 IPR013087 -
Lapu5g00502 703 MobiDBLite consensus disorder prediction 274 292 - -
Lapu5g00502 703 Pfam Zinc finger, C2H2 type 526 548 IPR013087 -
Lapu5g00502 703 ProSitePatterns Zinc finger C2H2 type domain signature. 528 548 IPR013087 -
Lapu5g00502 703 MobiDBLite consensus disorder prediction 138 171 - -
Lapu5g00502 703 SUPERFAMILY beta-beta-alpha zinc fingers 524 551 IPR036236 -
Lapu5g00502 703 FunFam Zinc finger protein 574 525 550 - -
Lapu5g00502 703 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Lapu5g00502 703 MobiDBLite consensus disorder prediction 268 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00502 Lapu-Chr5 4503681 4513298 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00502 317 676 C2H2 Transcription Factor Family AT5G22890 48.108 1.38e-102 317
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00502 zf-C2H2_6 1.8e-12 CL0361
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00502 5 4503681 4513298 Lapu5g00502 5 4503681 4513298 ECH