Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Lapu5g00502 | ATGTTGTCAGAAATATTAGACATGGAAGGCATGGCCACCGAGGAACTTGTCTCGTGTAACAACGATCCCACCAACATAGCCAAAGGCAAGCGCACAAAGCGGCGCTTGAGGCCTTTGTCGCCCTGTCTTGTCACCGCCATGACTGCTACGGCCGCCGCCGCCATGACGTCAAGCTGTTCAAGTGCTTCTGGCGGCGGTGGTGGGTCGTTTTCATCTATCACCCTGGAGGAGGAAGAGGAAGACATGGCTAATTGTTTGATTCTCCTTGCACAAGGAAGAGGAGGAAGGGATCCTCTTCATCACAAGGACCTATGTGATGATGTCAAGACAGAGAAGGGTGGCAACAAAATTGAATTTTATGTCTATGAGTGCAAAACATGCAACAGAACATTCCCTTCTTTTCAAGCACTCGGTGGACACAGGGCGAGTCACAAGAAACCCAAGGTTGAGGAAAAGAAATCCCCACCACCGTCGTTGCCACCACCACCACCACCGTCTTCGTCGTCGCAACTATTTAATTTTGAAGAAACAAAACAGAATCACGTGAAGATTAGCCCTTCAGTTTCGCTTCAATTAGGATGTGGAAATAATAGGGGTGGTTTAAGTTTCCATGGGAACAGGTCCAAGATTCACGAGTGTTCCATTTCCTCGGAATGTTCTAGAATTAGATCTCAACCTCCCGGCGCCGGAGGACGATCTCCGGGACTCGAAGTTTCAATTTCCGGGGAATCAGAATTCCATGATGCTGTCGGCTGCTCCGGCTTTGGTGGGATGCCATTATTAGAAGCCAGGGTGGGAATTGGACGGAGAGGGGGAGAAAATTCCGACCCATACAAAGTTGATGCTCCCAAGAAAGATACTGCTGAGTCTCACACCACAAAGGATTGGGCCACATCTAGCTTCCAAAATCATCAAGGGCTTCAGATGTTCCCTGACCCTGAAGATTTGGTGTCACCCTCTGTGGAATCTGGCTCAGCTTCACACTCCAGTACCCTCCTCTTCAATCTCTCTATTCTGAAGGACAAGGTTAGTGAGGTGCAGACCCTAGTAGGTGTTATTCTCTCCCCAAATCAAAGCCTACCCGAGTCAACTTCCATGGCCATATCTAGCATGAACTCCACAATCCAAGAAATCATAGTCACTGCCACATCAATGATGTTAACCTGCCAACAGATGGCTCTCACTACCCCTCCAGGTACTAATAATACTACTACATGCACCAACAAATTGCACCAGCTGAACAAGTTGCCTCACTCAAATTTTGGCACAAATAATAGAAGTGTGCTTGGTAACATAGGCATAGATATCGGTGACCATCATCAGGGTTTATTTTCTAGCACTGAGTCAGACGCACTGGACTGGTTTAGTGAAAGCTATAACAATAACGAAGATAATACCAATATTAGTAAGACTAAGGAAGATGATCCAAGCGTTGCAATTAGTGAAAACAATATGATTATTAGTAGAGGTGGAGTACTGTCCCCAAGGGAAGAAGGGTATAGTCATAGAGGGCTTTCACCAAAGAATAGTGATATAATTGAATTGGATGCTGCGGATTTGTTGGCTAAGTATACTCACTATTGCCAAGTTTGTGGCAAAGGGTTCAAGCGTGATGCGAATTTGAGGATGCACATGAGGGCTCATGGGGATGAGTACAAGACAAATGCTGCATTGAGCAACCCAATTAAGAATAAGGAGAAGTTAGAAGGGGAAAGAGAGTTTTTTATGAGCGTAAAGCCAAAGAGATATTCGTGTCCTCAAGAAGGGTGTAGGTGGAACCAAAAGCATGTCAAGTTCCAGCCATTAAAGTCTATGATTTGTGCTAAGAATCATTACAAGAGAAGCCATTGCCCCAAAATGTATGTGTGCAAGAGGTGCAACCAGAAGCAGTTCTCTGTGCTCTCTGATCTGAGGACACATGAGAAGCACTGTGGGGATCTCAAGTGGCAGTGTTCGTGTGGCACTTCGTTTTCTAGGAAAGACAAACTCATGGGCCATGTTGCTTTGTTCGTGGGGCACCAACCAGCTATCTACAATATTGGTCTGTCATCGTACTCAGGAAAATTGGAGCAGCACACATTGCAAATGCAGATTGATGGTAGCTCAAGATGA | 2112 | 0.4588 | MLSEILDMEGMATEELVSCNNDPTNIAKGKRTKRRLRPLSPCLVTAMTATAAAAMTSSCSSASGGGGGSFSSITLEEEEEDMANCLILLAQGRGGRDPLHHKDLCDDVKTEKGGNKIEFYVYECKTCNRTFPSFQALGGHRASHKKPKVEEKKSPPPSLPPPPPPSSSSQLFNFEETKQNHVKISPSVSLQLGCGNNRGGLSFHGNRSKIHECSISSECSRIRSQPPGAGGRSPGLEVSISGESEFHDAVGCSGFGGMPLLEARVGIGRRGGENSDPYKVDAPKKDTAESHTTKDWATSSFQNHQGLQMFPDPEDLVSPSVESGSASHSSTLLFNLSILKDKVSEVQTLVGVILSPNQSLPESTSMAISSMNSTIQEIIVTATSMMLTCQQMALTTPPGTNNTTTCTNKLHQLNKLPHSNFGTNNRSVLGNIGIDIGDHHQGLFSSTESDALDWFSESYNNNEDNTNISKTKEDDPSVAISENNMIISRGGVLSPREEGYSHRGLSPKNSDIIELDAADLLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKTNAALSNPIKNKEKLEGEREFFMSVKPKRYSCPQEGCRWNQKHVKFQPLKSMICAKNHYKRSHCPKMYVCKRCNQKQFSVLSDLRTHEKHCGDLKWQCSCGTSFSRKDKLMGHVALFVGHQPAIYNIGLSSYSGKLEQHTLQMQIDGSSR* | 704 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Lapu5g00502 | 703 | PANTHER | PROTEIN SENSITIVE TO PROTON RHIZOTOXICITY 1 | 306 | 678 | IPR044300 | GO:0010044|GO:0010447 | |
Lapu5g00502 | 703 | MobiDBLite | consensus disorder prediction | 154 | 168 | - | - | |
Lapu5g00502 | 703 | Coils | Coil | 703 | 703 | - | - | |
Lapu5g00502 | 703 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 526 | 553 | IPR013087 | - | |
Lapu5g00502 | 703 | Gene3D | Classic Zinc Finger | 619 | 669 | - | - | |
Lapu5g00502 | 703 | Pfam | C2H2-type zinc finger | 121 | 147 | - | - | |
Lapu5g00502 | 703 | SMART | c2h2final6 | 526 | 548 | IPR013087 | - | |
Lapu5g00502 | 703 | SMART | c2h2final6 | 583 | 616 | IPR013087 | - | |
Lapu5g00502 | 703 | SMART | c2h2final6 | 122 | 144 | IPR013087 | - | |
Lapu5g00502 | 703 | SMART | c2h2final6 | 621 | 643 | IPR013087 | - | |
Lapu5g00502 | 703 | Gene3D | Classic Zinc Finger | 520 | 583 | - | - | |
Lapu5g00502 | 703 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 122 | 149 | IPR013087 | - | |
Lapu5g00502 | 703 | MobiDBLite | consensus disorder prediction | 274 | 292 | - | - | |
Lapu5g00502 | 703 | Pfam | Zinc finger, C2H2 type | 526 | 548 | IPR013087 | - | |
Lapu5g00502 | 703 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 528 | 548 | IPR013087 | - | |
Lapu5g00502 | 703 | MobiDBLite | consensus disorder prediction | 138 | 171 | - | - | |
Lapu5g00502 | 703 | SUPERFAMILY | beta-beta-alpha zinc fingers | 524 | 551 | IPR036236 | - | |
Lapu5g00502 | 703 | FunFam | Zinc finger protein 574 | 525 | 550 | - | - | |
Lapu5g00502 | 703 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 124 | 144 | IPR013087 | - | |
Lapu5g00502 | 703 | MobiDBLite | consensus disorder prediction | 268 | 295 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Lapu5g00502 | Lapu-Chr5 | 4503681 | 4513298 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Lapu5g00502 | 317 | 676 | C2H2 Transcription Factor Family | AT5G22890 | 48.108 | 1.38e-102 | 317 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Lapu5g00502 | zf-C2H2_6 | 1.8e-12 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Lapu5g00502 | - | - | gmx:100802769 | 593.193 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Lapu5g00502 | 5 | 4503681 | 4513298 | Lapu5g00502 | 5 | 4503681 | 4513298 | ECH |