Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00499 ATGAACGCTATGGATGCAACTCACCAAGACACACCGGCGTACATTAATGATTTTGAGCTGTACGACTTCGTTGACAATCCAAATTTTGATCAGTTCATCAATTTGATCCGAGGGGAGAATGAAGATGCCAGCTGTGACTTCGGTTCTGACCTCATCACTGATTGTTTTGTTAACAATCAGCTCCTTCCATGCCCTGGAACCACTTTTGATCAGAACGATAACAATGCTGTGAATGTGTATGATCCAAGCTCAACGTTTAGCTCCTTTTCATGTTTTGACGGGGAGATGAAGGGAGAAGGAGAAGGAGAAGGAGAAAGAGAAGAAGAAGAAAATGATGGGGAGCATTCTTCTGAAACAACAACGACAACAACGACCAAGAATGATGATGATTCTAAACCCAAAGTAAAAAATGATAGGTCCAAGACTCTCATTTCTGAGAGGAGAAGGAGAGGCAGAATGAAGGAGAAGCTTTACGCATTGCGTTCTCTGGTTCCCAACATAACAAAGATGGACAAGGCTTCTATAATTGGAGACGCAGTAGCATACGTGCATGAGCTTCAAGCTCAAGCTAGGAAGCTGAAGGCTGAAGTTGCAGGACTTGAAGCATCCTTATTAGTATCTGAAAACTATCAAGGGTCAATGAACAATCCAAAAAATGTGCAAGTGGCCCGTAATAGTCGTCCAATCTGCAAGAAGATCATGCAGGTGGAGATGTTGCAAGTGGAGGAAAGAGGGTATTATGCAAAAATAGTGTGCAATAAAGGAGAAGGAGTGGCTGCATCGTTGTTCAGGGCTCTTGAGTCTCTTGCAGGTTTTAATGTTCAGAATTCAAACTTGGCTACAGTGTGTAACAGTTTTCGACTTACATTTACATTGAATATAAAAGGATCTGAACCAGAAATTAACCTGCAAAATTTGAAGCTGTGGGTGACTGGCGCTCTTCTGAACCAAGGCTTTGAATTCGTGGCATCTTTTTCTGGTTGA 984 0.4217 MNAMDATHQDTPAYINDFELYDFVDNPNFDQFINLIRGENEDASCDFGSDLITDCFVNNQLLPCPGTTFDQNDNNAVNVYDPSSTFSSFSCFDGEMKGEGEGEGEREEEENDGEHSSETTTTTTTKNDDDSKPKVKNDRSKTLISERRRRGRMKEKLYALRSLVPNITKMDKASIIGDAVAYVHELQAQARKLKAEVAGLEASLLVSENYQGSMNNPKNVQVARNSRPICKKIMQVEMLQVEERGYYAKIVCNKGEGVAASLFRALESLAGFNVQNSNLATVCNSFRLTFTLNIKGSEPEINLQNLKLWVTGALLNQGFEFVASFSG* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00499 327 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 16 317 - -
Lapu5g00499 327 MobiDBLite consensus disorder prediction 125 148 - -
Lapu5g00499 327 MobiDBLite consensus disorder prediction 91 148 - -
Lapu5g00499 327 Gene3D - 127 203 IPR036638 GO:0046983
Lapu5g00499 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 137 186 IPR011598 GO:0046983
Lapu5g00499 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 137 210 IPR036638 GO:0046983
Lapu5g00499 327 FunFam Basic helix-loop-helix (BHLH) DNA-binding superfamily protein 133 203 - -
Lapu5g00499 327 Coils Coil 183 203 - -
Lapu5g00499 327 SMART finulus 143 192 IPR011598 GO:0046983
Lapu5g00499 327 Pfam Helix-loop-helix DNA-binding domain 144 187 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00499 Lapu-Chr5 4474824 4476286 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00499 15 319 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G28160 52.532 6.97e-99 292
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Lapu5g00499 HLH 4.7e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00499 K26214 - gmx:100805451 471.47
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00499 5 4474824 4476286 Lapu5g00499 5 4474824 4476286 ECH
Lapu5g00499 5 4474824 4476286 Lapu11g00403 11 7153031 7154317 PCT