Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00493 ATGGGAAGGGCTCCTTGCTGTGACAAGGCAAATGTGAAGAGAGGACCGTGGTCACCAGAAGAAGACTCAAAGCTGAAGGAGTACATAGAGAAGCACGGAACTGGAGGGAATTGGATTGCTCTTCCTCAGAAAGCTGGTCTAAGGAGATGCGGAAAAAGTTGCAGATTGAGATGGCTTAACTATCTTAGGCCCAACATTAAGCACGGGGAATTCTCCGACGAGGAAGACAGAATAATCTGCAGCCTTTATGCTAATATTGGAAGCAGGTGGTCAATTATAGCTGCTCAGTTACCAGGCAGGACTGACAATGATATCAAGAACTATTGGAACACCAAGCTTAAGAGGAAACTCATGGGGTTGCTTCCTGCATCTCACCAAAGAATACCACCCTATCAACACTCTTCCACCCTAAACCCTCCATTATCATCTTCTTCTCAACCATCTCTATCCTCTTCAATCTATAGGGACTACTGCAACAACTCTCATTATTACATCCCAGCACCAACCTCAACTTTCCCATGCCTTCAACCAAGTTCTGTTCCTTCAAGTAATTACACAAGCACAAACCCCTCTCTCCCTTTTTATCAAAACCGAGAGCCTTTGGTGAGTGCTAGTCCCATGCAGTATTACCCCACCACAGACAGTTCCATGCTTGTGTTCGGAAGTGAAACAAGTTGCAGTTCCTCTGACGGAAGCTGCAGCCAGGTCAGCCTTGGAAGAGAGATAAAACAAGAAGAAATGGGGTTTCAGAATTTAATGTTTGGAGATCAGCACATGAACAAATTCGTGCTTAGTCAAGGCAACATTAATCATGATGGAGGTGAAGAGTATGTGAAGCAATGGACAGAGAAGCCAAATGGGTGCTTCTTCCAAATGCAACAAACAGCATTGGATTACGATCTTGAGGCTATTAAACAACTGATTAGTAGTAACAGTAGCAGTAATAATAGTAATAATGGGTATTTTAGTATTGATGAAAACAAGACGGAGGAGAAGGGAGTGTACTACAACTACTGA 1017 0.4346 MGRAPCCDKANVKRGPWSPEEDSKLKEYIEKHGTGGNWIALPQKAGLRRCGKSCRLRWLNYLRPNIKHGEFSDEEDRIICSLYANIGSRWSIIAAQLPGRTDNDIKNYWNTKLKRKLMGLLPASHQRIPPYQHSSTLNPPLSSSSQPSLSSSIYRDYCNNSHYYIPAPTSTFPCLQPSSVPSSNYTSTNPSLPFYQNREPLVSASPMQYYPTTDSSMLVFGSETSCSSSDGSCSQVSLGREIKQEEMGFQNLMFGDQHMNKFVLSQGNINHDGGEEYVKQWTEKPNGCFFQMQQTALDYDLEAIKQLISSNSSSNNSNNGYFSIDENKTEEKGVYYNY* 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00493 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Lapu5g00493 338 SMART sant 13 64 IPR001005 -
Lapu5g00493 338 SMART sant 67 115 IPR001005 -
Lapu5g00493 338 FunFam Transcription factor RAX3 7 68 - -
Lapu5g00493 338 FunFam Transcription factor MYB36 70 138 - -
Lapu5g00493 338 CDD SANT 16 62 IPR001005 -
Lapu5g00493 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Lapu5g00493 338 PANTHER OS09G0431300 PROTEIN 1 283 - -
Lapu5g00493 338 Gene3D - 7 68 - -
Lapu5g00493 338 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Lapu5g00493 338 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Lapu5g00493 338 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Lapu5g00493 338 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Lapu5g00493 338 CDD SANT 70 113 IPR001005 -
Lapu5g00493 338 Gene3D - 69 136 - -
Lapu5g00493 338 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00493 Lapu-Chr5 4394916 4396463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00493 1 201 MYB Transcription Factor Family AT5G57620 60.096 9.95e-78 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00493 Myb_DNA-binding 9.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00493 K09422 - gmx:100796382 545.043