Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00492 ATGCAGAGATCCGGATATGGCTCCGACGGAATTTTCAGATCTCTCAGACCTTCAATCGTTTTCCCCAAACAACCCAACCTCTCACTCGTTTCCCACCTCTTCAACAGAGTCGCACCGTTTCCCTCCAAACACGCCCTTATCGATGCCGATTCTTCCCAAACCCTTTCATTTGCGCAGTTGAAGTCCCTCACCGTTAAAGTCTCGCACGGCCTCCTCCGTCTCGGCGTCGCCAAAAACGACGTCGTTCTCTTCCTCGCCCCCAACGATATCCGCTACATCGTCTGCTTCCTCGCCGTCACTTCCCTCGGCGCCGCCGTCACTACCGTCAATCCCGCCTACACCGCCGCCGAGGTCGCCAAACAGGCCAAAGACTCCAATCCCAAACTTGTCGTCACTGTCCCCGAACTGTGGGACAAGCTCCAACACCTCAACCTTCCCGCGGTGTTCCTACACTCCCATGCCCCCTCCCACGCGACTAGCTTTGACGCGCTCGTCCAACTCGCAGGGTCGCCGACCGAGTTTCCGAAGGTTGACGTCAAGCAGAGTGACACGGCGGCGCTGCTGTACTCCTCCGGGACCACGGGACTGAGCAAGGGCGTGGTTCTCACGCACGGGAACTTCGTGGCGGCGTCGTTGATGATGGGATTGGACGATGATTTGGCCGGGGAGATGCATAGCGTGTTCCTCTGCGTTCTGCCGATGTTTCATGTGTTTGGTTTGACGGTGATTTCGTACGCCCAGCTTCAGAGGGGCAGTGCTGTGGTGTCTCTGAAGAAGTTTGAGTTTGAACTGGTTTTGAAGACGATTGAGAAGTACAGGGTGACTCACTTGTGGGTTGTGCCTCCGATTATTCTTGCTTTGGCCAAACATGGTTTGGTCGATAAGTATGATCTTTCCTCGCTGAAGCATATTGGTTCTGGTGCTGCTCCTCTTGGGAAAGAGTTGATGGAGGAGTGTGCTAAACGTTTCCCTCGTGCCACTGTTTCTCAGGGATATGGTATGACTGAAACATGTGGGATTGTTTCTGTGGAAAATACAAGGATGGGGATTCGGCATAGTGGCTCTGCGGGAATGCTTGTTTCGGGAGTGGAAGCTCAAATAGTTAGCGTGGATACGCTGAAGCCTCTCCCTCCTGGACAGTTGGGAGAGATATGGGTACGGGGTCCTAATATGATGCAAGGTTATCACAACAATCCCCAAGCCACAAGATTGACTATAGATAAAAAAGGGTGGGTACATACAGGAGATCTTGGATATTTTGACGAGGATGGGCAACTTTTTGTTGTTGACCGTATCAAAGAACTGATAAAGTATAAAGGCTTTCAGGTTGCACCAGCAGAACTTGAAGGTCTTCTTGTTTCTCACCCTGAAATACTTGATGCTGTTGTCATCCCATATCCTGATGCTGAAGCTGGAGAGGTTCCAGTTGCCTATGTCGTTCGCTCACCCAATAGTTCACTGACTGAGGAAGATGTTCAAAAGTTTATTTCTAATCAGGTAGCACCTTTCAAAAGATTACGAAGAGTGTCATTCATCAATGCTGTTCCTAAGACAGCATCAGGAAAAATTCTCCGAAGAGAGCTTATTGAGAAAGTAAGATCCAAAATATGA 1611 0.504 MQRSGYGSDGIFRSLRPSIVFPKQPNLSLVSHLFNRVAPFPSKHALIDADSSQTLSFAQLKSLTVKVSHGLLRLGVAKNDVVLFLAPNDIRYIVCFLAVTSLGAAVTTVNPAYTAAEVAKQAKDSNPKLVVTVPELWDKLQHLNLPAVFLHSHAPSHATSFDALVQLAGSPTEFPKVDVKQSDTAALLYSSGTTGLSKGVVLTHGNFVAASLMMGLDDDLAGEMHSVFLCVLPMFHVFGLTVISYAQLQRGSAVVSLKKFEFELVLKTIEKYRVTHLWVVPPIILALAKHGLVDKYDLSSLKHIGSGAAPLGKELMEECAKRFPRATVSQGYGMTETCGIVSVENTRMGIRHSGSAGMLVSGVEAQIVSVDTLKPLPPGQLGEIWVRGPNMMQGYHNNPQATRLTIDKKGWVHTGDLGYFDEDGQLFVVDRIKELIKYKGFQVAPAELEGLLVSHPEILDAVVIPYPDAEAGEVPVAYVVRSPNSSLTEEDVQKFISNQVAPFKRLRRVSFINAVPKTASGKILRRELIEKVRSKI* 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00492 536 SUPERFAMILY Acetyl-CoA synthetase-like 19 534 - -
Lapu5g00492 536 ProSitePatterns Putative AMP-binding domain signature. 187 198 IPR020845 -
Lapu5g00492 536 Gene3D - 9 433 IPR042099 -
Lapu5g00492 536 Pfam AMP-binding enzyme 35 438 IPR000873 -
Lapu5g00492 536 Coils Coil 536 536 - -
Lapu5g00492 536 Gene3D - 434 535 IPR045851 -
Lapu5g00492 536 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 9 531 - -
Lapu5g00492 536 FunFam Long-chain-fatty-acid--CoA ligase FadD 13 433 - -
Lapu5g00492 536 Pfam AMP-binding enzyme C-terminal domain 447 522 IPR025110 -
Lapu5g00492 536 CDD 4CL 21 528 - -
Lapu5g00492 536 FunFam 4-coumarate--CoA ligase 2 434 535 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00492 Lapu-Chr5 4385463 4389346 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00492 1 536 Monolignol Biosynthesis Gene Families AT4G05160 67.279 0.0 777
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00492 K01904 - gmx:100797843 958.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00492 5 4385463 4389346 Lapu5g00492 5 4385463 4389346 ECH
Lapu5g00492 5 4385463 4389346 Lapu11g00422 11 7355324 7359851 PCT