Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00490 ATGGTGTCTGACGCAAGCAAGAAGAAGGCAGCACAAAAGAAAGCGGCGGCGGCGGCCAAGAGGGGTGGCAAAGCGGCTGCTACTTCTTCCAAAACTTCCTCTTCAGAGAAGCCAGCCGACAAGCTCGCCAACGGAATTGGGGAAATTCAGATTTCCGATCGAACCTGCACCGGCGTCCTCTGCTCTCATCCTCTTTCGAGGGATATTAGGATAGAATCTCTGTCAGTTACTTTCCATGGACACGATTTGATAGTTGATTCTGAATTGGAGCTAAACTATGGAAGACGATATGGCTTGCTTGGATTAAATGGTTGTGGAAAATCTACCCTTCTTACGGCAATAGGTTGCCGAGAGCTACCTATTCCAGATCACATGGATATTTATCACCTTACCAGAGAAATTGAAGCCTCTGACATGTCTGCATTGGAGGCTGTCATAAGCTGTGACGAGGAAAGGTTGAGATTGGAGAAAGAAGCTGAAGCTTTGGCAGCTCAGGATGATGGGGGTGGTGAAACTCTTGAACGTCTTTATGAACGATTGGAAGCCTTAGATGCATCAACTGCAGAAAAGCGTGCTGCTGAAATTTTATTTGGTCTTGGTTTCAACAAGCAGATGCAGGCAAAGAAGACCCGTGATTTTTCTGGTGGCTGGAGAATGAGGATAGCTTTAGCACGTGCTCTATTTATGAACCCAACCATTCTTTTACTTGATGAACCAACCAATCACCTCGATTTGGAGGCTTGTGTGTGGCTAGAAGAGAATTTGAAAAAGTTCGACCGCATTCTGGTTGTGGTTTCACACTCCCAGGATTTCCTTAATGGTGTCTGCACAAATATCATCCACATGCAAAACAAGAAGCTGAAGCTCTATACTGGTAATTACGATCAATATGTTCAGACACGTGCTGATCTTGAAGAGAACCAGATGAAGCAGTACAAATGGGAGCAGGAGCAAATTGCCTCCATGAAGGAATATATAGCCCGATTTGGTCATGGATCAGCAAAACTTGCACGCCAAGCCCAGAGTAAAGAGAAAACTCTTGCAAAAATGGAGCGGGGTGGACTCACAGAGAAGGTGGTAAGAGACAAAATTTTGGTATTCCGCTTTGTTGATGTGGGAAAACTTCCCCCGCCTGTCCTCCAGTTTGTTGAGGTGACATTTGGTTACACTCCTGATAATCTGATCTACAAAAACCTTGACTTTGGGGTTGATTTAGACTCTAGGATTGCTCTTGTTGGACCCAATGGAGCCGGGAAGAGTACGTTACTGAAGCTAATGACGGGCGATCTGGTACCAATAGATGGCATGGTTCGACGCCACAATCACCTTCGAATTGCACAATTTCACCAGCACCTGGCTGAAAAGCTGGACTTGGAACTGTCTGCTCTCCAGTTTATGATAAAAGAATACCCTGGAAATGAGGAGGAGAGGATGAGAGCAGCTATTGGTAAATTTGGACTATCGGGTAAAGCGCAGGTGATGCCGATGAAGAATTTATCTGACGGGCAGAGGAGCCGCGTGATATTCGCATGGTTAGCTTATAGACAGCCTCACTTGCTACTTCTGGATGAGCCAACTAACCATTTGGATATTGAGACAATTGATTCGTTGGCTGAAGCATTGAATGAATGGGACGGTGGCATGGTGCTTGTTAGTCATGATTTTAGGCTCATCAATCAAGTGGCCCATGAGATATGGGTCTGCGCTGATCAAGCTGTGACCAGATGGGAAGGTGACATTATGGATTTTAAGGAGCACCTGCGATCAAAGGCCGCTTTATCTGACTCTACATAA 1794 0.4565 MVSDASKKKAAQKKAAAAAKRGGKAAATSSKTSSSEKPADKLANGIGEIQISDRTCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSELELNYGRRYGLLGLNGCGKSTLLTAIGCRELPIPDHMDIYHLTREIEASDMSALEAVISCDEERLRLEKEAEALAAQDDGGGETLERLYERLEALDASTAEKRAAEILFGLGFNKQMQAKKTRDFSGGWRMRIALARALFMNPTILLLDEPTNHLDLEACVWLEENLKKFDRILVVVSHSQDFLNGVCTNIIHMQNKKLKLYTGNYDQYVQTRADLEENQMKQYKWEQEQIASMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLTEKVVRDKILVFRFVDVGKLPPPVLQFVEVTFGYTPDNLIYKNLDFGVDLDSRIALVGPNGAGKSTLLKLMTGDLVPIDGMVRRHNHLRIAQFHQHLAEKLDLELSALQFMIKEYPGNEEERMRAAIGKFGLSGKAQVMPMKNLSDGQRSRVIFAWLAYRQPHLLLLDEPTNHLDIETIDSLAEALNEWDGGMVLVSHDFRLINQVAHEIWVCADQAVTRWEGDIMDFKEHLRSKAALSDST* 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00490 597 FunFam Abc transporter f family member 1 69 333 - -
Lapu5g00490 597 PANTHER ATP-BINDING TRANSPORT PROTEIN-RELATED 37 590 - -
Lapu5g00490 597 Coils Coil 287 307 - -
Lapu5g00490 597 SMART AAA_5 405 597 IPR003593 GO:0016887
Lapu5g00490 597 SMART AAA_5 93 295 IPR003593 GO:0016887
Lapu5g00490 597 CDD ABCF_EF-3 380 571 - -
Lapu5g00490 597 Gene3D - 356 596 IPR027417 -
Lapu5g00490 597 ProSitePatterns ABC transporters family signature. 213 227 IPR017871 GO:0005524|GO:0016887
Lapu5g00490 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 63 305 IPR027417 -
Lapu5g00490 597 Pfam ABC transporter 396 527 IPR003439 GO:0005524
Lapu5g00490 597 Gene3D - 69 333 IPR027417 -
Lapu5g00490 597 Pfam ABC transporter 87 241 IPR003439 GO:0005524
Lapu5g00490 597 FunFam ATP-binding cassette sub-family F member 3 340 595 - -
Lapu5g00490 597 CDD ABCF_EF-3 69 286 - -
Lapu5g00490 597 Pfam ABC transporter 280 352 IPR032781 -
Lapu5g00490 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 69 309 IPR003439 GO:0005524
Lapu5g00490 597 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 380 595 IPR003439 GO:0005524
Lapu5g00490 597 MobiDBLite consensus disorder prediction 1 40 - -
Lapu5g00490 597 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 363 574 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00490 Lapu-Chr5 4352712 4357041 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00490 200 267 Calmodulin-binding Proteins AT2G36910 41.429 9.30e-08 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00490 K06185 - gmx:100785099 1091.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00490 5 4352712 4357041 Lapu5g00490 5 4352712 4357041 ECH
Lapu5g00490 5 4352712 4357041 Lapu11g00424 11 7396422 7401023 PCT