Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00483 ATGTCTTCAACTGGTTCAGTGAATAACATGAGTGTAGAGAGGGGGTATGAATCTTTTTCTGCCAATGAAGGTCCCTCAGTGATGCAAAACAGGAAGCCTCCTTCCAGGGGCATCAAGAAGGACCGCCACATCAAGGTGAATGGGAGAGACCGCCGAGTTCGTCTATCAGCAATCTGTGCTGCTCGTATCTTCCAACTCACCCGTGAGCTAGGCAAGAAGACAGATGGTGAGACCATCGAATGGCTCTTACAGAAGGCTGAGCCCGCCATTATGGCCGCCACTGGCACCGGCATTGTGCCTTCCATGACCTCGGTGGACAACAACGCCACCTTCATGGCCAACAACACCACCTTTGTGCCACTAGACACAGGTGTTGCTCAGGAGGCCAACTTAGTCAACTTTGCTGCAGTTCCAAGGACAGAGCAGCCGATCCCACCTTTCCATTTCGACTTTGATTGGATGCAACACTCCGATTTAGGATTTCGTGACAATTAA 495 0.5091 MSSTGSVNNMSVERGYESFSANEGPSVMQNRKPPSRGIKKDRHIKVNGRDRRVRLSAICAARIFQLTRELGKKTDGETIEWLLQKAEPAIMAATGTGIVPSMTSVDNNATFMANNTTFVPLDTGVAQEANLVNFAAVPRTEQPIPPFHFDFDWMQHSDLGFRDN* 165
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00483 164 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 26 110 IPR005333 GO:0003700
Lapu5g00483 164 MobiDBLite consensus disorder prediction 1 29 - -
Lapu5g00483 164 MobiDBLite consensus disorder prediction 1 42 - -
Lapu5g00483 164 ProSiteProfiles TCP domain profile. 39 93 IPR017887 -
Lapu5g00483 164 Pfam TCP family transcription factor 39 104 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00483 Lapu-Chr5 4269149 4275812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00483 19 101 TCP Transcription Factor Family AT1G69690 61.446 1.09e-32 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Lapu5g00483 TCP 9.2e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00483 - - pvu:PHAVU_005G132500g 273.092