Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00481 ATGAGCAGTTTAAGGCCCGAGTCTCATGTGGCACAGCAAATTCGGCGCGAAAAATTGAGAATCCAAAACGGTTCTCAGCCTCTGCACGAATTCCCTAACAATCTTGAACCGCTATCGTTACAGCCGGGGTTTAATAACTTTGACCTTCTTCACGTTAGGAATGTTAGAAACGCTAACATGCTTGATGAACCAGCTGTTTATTCATCAGAGATGCTAAACTTCTCCACTTCTTCAAACCCTTTGTCTGCTCCAAAGAACGCGTTGGAGTATCATCAAGAAATAGGCGCAGTTGAACCGAGTAATAGGCTGATGATGAATCAGTATGGTTCATTTTCCCATTCCATGCCTGCAATTCATTCTTCCCACAAGGAACAGTGTGAACTTCGTAATTTGGGAAATTGGAGGAACAGTGCTCCCCAGCAAGGATCTGATTGGTTTGTAAATTATGCAATTAATGCCAATTCTTTTCTATCTTCTGAGCTCAACAACGTGTCTTCTTACAACGAACTAATGGATGTACAGTGTAGTAATGCTTCTGATGAAATAAGTGGTAGAGAAGTTCAAAAGCAATTAGGTGTACTGCATAATCCTCCTCCTTCTCCACTGTATCAGAATGCTTTGCAAGATATTGTGAAGTCGGCTTCTATCAGCGCCCACACTAGGCAAGACATGACTTCCCTAATGCAACAAAACGACCACAGCCTTTGGGTGGGTAATGGTAGTAGTGAAGTTGAGCCTCAACAACCGAGTTATGGAAATCACCCAAATCCGCTGCGTTTTGGATGGACAAATCGAGCAATAGATAATATCCCGAGTGATTCACTTCCTCAGAGCTTATCCTTGTCACTTTCATCGAATGCACAACCCAAGCCATCCTTTTCTCAGCATGAACAAGGGTCTACATCCGATGATCCTCGTTGTTTGAAGAATATGAAGCCGTCCATTGTTTCTAGAGATTGTACGAAATCACTTCAAGACACCGTGGGAGTGCCTTCAAAGAGTACTATTAGTTACCGAAGTGTGGGTCCCCTTGGCCCTTTCACTGGGTATGCTACTATTCTCAAGAGTTCAAGGTTCTTAAAGTCTGTCCAACAATTGTTAGATGAGATTTGCTGTCCATCTGGTGCAAAAATTGCGAAATCATATGATGTTTCAGAACGGGTTTCTCTAGAAGTTAGTGCTTCTTCTTCTGCGGATACTGTTACTGTCAATGAAACCGGGGTTACTGCTAAAGGTAGTAACTCAGGTTCTTCATCAACTATGTTGTATAATGTCTCAAAGGAAAATAGTGCTGATCTGGGAGTTGGAAGTAGCTTTGGTCTTTCTTCGCGGCCAGATTATCGACAGAAGAAAGCAAAGCTGCTGTACATGCAAGAGGAGGTTACCAGGCAATGCAAGCAGTACCATCTACAAATGCAAATGGTTATTTCATCGTTCGAGTCAGTAGCGGGTCTTAGTTCTGCTACTCCTTATGTCTCCGTGGCTCTGAAGTCAGTATCAAAACACTTCAGGTGCCTAAAAAATTCTATCTCAGATCAGCTCAAGCTTCTAAGCGAAGCCTTGGGAGAGGATTTGTCGATACCCTCCTCCAGTACTTGTAGTAAAGCTGACACTACAATGGCAAGGATAAGATGCAGCATGGACCAAAGCTTTCTAAAGAACAAGTCTGGCAGGGGTACTACGGATCTTCTTGATCCCCAACAGCATGTGTGGAGGCCCCAGAGAGGGTTGCCAGAGCGTGCAGTGGCAATTCTTAAAGCCTGGTTATTTGAGCATTTTCTTCATCCTTACCCTACAGACACTGATAAACACATGCTGGCTACTCAAACAGGTCTATCACGGAATCAGGTATCAAATTGGTTCATAAATGCTCGAGTACGAGTATGGAAGCCGATGGTGGAGGAGATACATATGCTTGAAACAAAAGCAACAGGCACTAAGGAGAGGAGTGGTAATCATGAGGGAACATCTTCTGGCACTGAAGGTGATACCAGCCATCCTAGAGTGGATAAGCCTTTGAATAGTATTGGTATGAATTCAATACCTGAAAACCGATTTGAGGGCATGGAAATGGGATCAAGCAATGCTGAGGAAAGTGGGTTAAATGAAGAACAATGGAGTCAAGAGAAGAGATCTAAATTGGAATGCCAAATGACTTCAAACAATATGGATGGTACACTGATGGGTTTTGTGCCATACCGACGTGGTGGCCTTGAGGTTGGTGGACTTGGTTCCGTGTCACTAACATTGGGTCTTAGGCATGGCGTTGAAGGGGTACAACACCATCAACAACTGCAAGAGGAGCAGCTTAGACACCATCTTGGAGGGCACATGATCGGTGACTTTGTGGGCTGA 2355 0.4391 MSSLRPESHVAQQIRREKLRIQNGSQPLHEFPNNLEPLSLQPGFNNFDLLHVRNVRNANMLDEPAVYSSEMLNFSTSSNPLSAPKNALEYHQEIGAVEPSNRLMMNQYGSFSHSMPAIHSSHKEQCELRNLGNWRNSAPQQGSDWFVNYAINANSFLSSELNNVSSYNELMDVQCSNASDEISGREVQKQLGVLHNPPPSPLYQNALQDIVKSASISAHTRQDMTSLMQQNDHSLWVGNGSSEVEPQQPSYGNHPNPLRFGWTNRAIDNIPSDSLPQSLSLSLSSNAQPKPSFSQHEQGSTSDDPRCLKNMKPSIVSRDCTKSLQDTVGVPSKSTISYRSVGPLGPFTGYATILKSSRFLKSVQQLLDEICCPSGAKIAKSYDVSERVSLEVSASSSADTVTVNETGVTAKGSNSGSSSTMLYNVSKENSADLGVGSSFGLSSRPDYRQKKAKLLYMQEEVTRQCKQYHLQMQMVISSFESVAGLSSATPYVSVALKSVSKHFRCLKNSISDQLKLLSEALGEDLSIPSSSTCSKADTTMARIRCSMDQSFLKNKSGRGTTDLLDPQQHVWRPQRGLPERAVAILKAWLFEHFLHPYPTDTDKHMLATQTGLSRNQVSNWFINARVRVWKPMVEEIHMLETKATGTKERSGNHEGTSSGTEGDTSHPRVDKPLNSIGMNSIPENRFEGMEMGSSNAEESGLNEEQWSQEKRSKLECQMTSNNMDGTLMGFVPYRRGGLEVGGLGSVSLTLGLRHGVEGVQHHQQLQEEQLRHHLGGHMIGDFVG* 785
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00481 784 Gene3D - 574 636 - -
Lapu5g00481 784 MobiDBLite consensus disorder prediction 642 679 - -
Lapu5g00481 784 MobiDBLite consensus disorder prediction 235 257 - -
Lapu5g00481 784 Pfam Homeobox KN domain 588 627 IPR008422 GO:0003677|GO:0006355
Lapu5g00481 784 SMART HOX_1 571 635 IPR001356 GO:0003677
Lapu5g00481 784 SUPERFAMILY Homeodomain-like 573 637 IPR009057 -
Lapu5g00481 784 FunFam BEL1-like homeodomain protein 9 574 636 - -
Lapu5g00481 784 ProSiteProfiles 'Homeobox' domain profile. 568 631 IPR001356 GO:0003677
Lapu5g00481 784 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 233 656 - -
Lapu5g00481 784 MobiDBLite consensus disorder prediction 277 309 - -
Lapu5g00481 784 SMART prehox3 348 512 IPR006563 -
Lapu5g00481 784 MobiDBLite consensus disorder prediction 235 254 - -
Lapu5g00481 784 MobiDBLite consensus disorder prediction 277 307 - -
Lapu5g00481 784 Pfam Associated with HOX 353 511 IPR006563 -
Lapu5g00481 784 CDD homeodomain 571 632 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00481 Lapu-Chr5 4228291 4235473 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00481 277 640 Homeobox Transcription Factor Family AT1G19700 36.504 6.26e-62 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Lapu5g00481 POX 6.8e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00481 - - gmx:100790583 1200.27
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00481 5 4228291 4235473 Lapu5g00481 5 4228291 4235473 ECH
Lapu5g00481 5 4228291 4235473 Lapu11g00433 11 7601836 7607621 PCT