Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00469 ATGAAGGACTCTTGGTTTTTCGACAACAACTTCAATGGTCTGTCGGATGATATCTTTGATGATGTCGTCGGCTTTTTTGATTTCCCACTGGAAGATGTGGAAGAAGACTGGGATTCTCAAATAAAATGCCTTGAAGATCAACATTCTGAGGTTTTTTCAGCATCATCAAATGGGCTGTGTGGCAAAACTCAAACTGAAACCCCCCAATTTGGGACGGAGTTCTCTGCTTCTTGTAATGGGATTTCCCCAATAAAACAGCTGGCAAAGGCTCCTGTACCAACATATGGAAAAACCATTCCTCTCAAGAATGTCACTTTCAATGGAAAAGATTTGCATCAATTCCGAACCTACAGCCCAGTTTCAGTTTTTGAAAGCAGCAGTTCTTCGTCTGTCGAGAATTCCAACTTTGAACGACCTGTCGTTCCAGTAAAGCGTGCTCGAAGTAAACGGCAACGTCCTTCAAGCTTCAGCCCTCTATATTCCATTCCTTTCATCCTTAACGCACAGGCTTTGCAAAAACAGCAAAGGGCATCTGCCTCTGAATCAGATTTCGGAACAAATGTTGCTGGGAATATGTCAAACAAAGTAAAAGGCCACAGGAAAAAGGATTTGTCCCTGCTATCAGAAGATGTTGAGATGATGAGATCCTCACATCTGGAGTCAGATACTCCCAGAAAATGCATGCATTGTGAGGTGACAAAGACCCCACAATGGAGAGAGGGACCTATGGGTCCCAAAACACTCTGCAATGCTTGTGGTGTTCGATACAGGTCTGGCCGCCTCTTTCCCGAATACAGGCCAGCAGCTAGCCCAACTTTTGTTTCATCATTGCACTCAAACTGTCACAAGAAGGTCGTGGAGATGAGAAGCAGAGTCCAGGAGGGTGTTAGGAGTTCTATGTTTGCTTCGTCAAATCTTCATGGAAATTCTGTAGGATAA 939 0.4409 MKDSWFFDNNFNGLSDDIFDDVVGFFDFPLEDVEEDWDSQIKCLEDQHSEVFSASSNGLCGKTQTETPQFGTEFSASCNGISPIKQLAKAPVPTYGKTIPLKNVTFNGKDLHQFRTYSPVSVFESSSSSSVENSNFERPVVPVKRARSKRQRPSSFSPLYSIPFILNAQALQKQQRASASESDFGTNVAGNMSNKVKGHRKKDLSLLSEDVEMMRSSHLESDTPRKCMHCEVTKTPQWREGPMGPKTLCNACGVRYRSGRLFPEYRPAASPTFVSSLHSNCHKKVVEMRSRVQEGVRSSMFASSNLHGNSVG* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00469 312 Pfam GATA zinc finger 227 260 IPR000679 GO:0006355|GO:0043565
Lapu5g00469 312 Gene3D - 218 294 IPR013088 GO:0006355|GO:0008270
Lapu5g00469 312 MobiDBLite consensus disorder prediction 179 201 - -
Lapu5g00469 312 CDD ZnF_GATA 226 273 IPR000679 GO:0006355|GO:0043565
Lapu5g00469 312 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 219 282 - -
Lapu5g00469 312 FunFam GATA transcription factor 217 303 - -
Lapu5g00469 312 ProSiteProfiles GATA-type zinc finger domain profile. 221 257 IPR000679 GO:0006355|GO:0043565
Lapu5g00469 312 PANTHER GATA TRANSCRIPTION FACTOR 34 293 - -
Lapu5g00469 312 MobiDBLite consensus disorder prediction 179 193 - -
Lapu5g00469 312 ProSitePatterns GATA-type zinc finger domain. 227 252 IPR000679 GO:0006355|GO:0043565
Lapu5g00469 312 SMART GATA_3 221 271 IPR000679 GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00469 Lapu-Chr5 4050863 4055172 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00469 8 301 C2C2-Gata Transcription Factor Family AT1G08010 35.331 2.98e-53 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Lapu5g00469 GATA 3.5e-16 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00469 - - gmx:100778675 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00469 5 4050863 4055172 Lapu5g00469 5 4050863 4055172 ECH