Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00468 ATGAAGGAAACAGAGAAGAGTTTGGATCCGCAGCTGTGGCACGCATGCGCCGGCGGCATGGTTCAGATGCCGCCGGTGAACTCCAAGGTGTTCTACTTTCCTCAGGGACACGCGGAACACGCGCAGTACAACCTCGATTTCGGAGCCTCCAGGATTCCGATTCCGCCGCTCGTTCTCTGCCGCGTGGCGGCTGTCAAATACCTCGCCGACCCCGAAACCGACGAGGTCTTCGCCAGGTTGAGGTTGGTTCCTCTCAGAAACACCGAGCTTGATCACGAAGACGGCGATAAAGTTGACGGTAACGGCGCGGAGGGTTCTGAAAAGCCAGCGTCGTTCGCGAAGACGTTAACTCAATCGGACGCGAACAATGGTGGGGGATTCTCCGTGCCGAGATACTGCGCGGAGACTATTTTCCCGCGGCTGGATTACTCGGCGGAGCCGCCGGTGCAGACGGTGATCGCGAAGGACGTGCACGGCGAGGTGTGGAAGTTCCGGCACATTTACCGGGGGACACCGCGTCGGCACTTACTTACCACCGGGTGGAGCAGTTTCGTGAACCAGAAGAAACTGGTTGCTGGGGATTCCATAGTGTTTCTGCGGGCGGAGAATGGGGATCTCTGCGTGGGGATTCGTAGGGCGAAGAGAGGGGGTGTTGGTGGGCCCGAGGCGCCTTGTGGGTGGAGTTCCGGTGGTGGTGGTGGTGGTGGGCTTGGGATTGGAGCTTATGGGGCCTTTTCGGCTTTCTTGAGGGAGGAGAGCAAGGTGGTGAGGAATGGGTGTGGGAGGCCGAAAGTGAGTGGTGAGTCTGTGAGGGAAGCTATTGCTTTGGCTGCTAATAACCAACCCTTCGAGGTTGTATATTACCCTCGAGCCAACACCCCTGAGTTTTGTATTAGGACTTCTGCTGTGAGAGGTGCTATGAGGATTCAGTGGTGCTCTGGGATGAGGTTTAAGATGCCCTTTGAGACTGAGGATTCTTCCAGGATAAGCTGGTTCATGGGCACCATAGCTTCTGTTCAGGTTCTTGATCCTATCCGCTGGCCTAATTCACCTTGGAGACTTCTTCAGGTTACGTGGGATGAGCCAGATTTGCTACATAATGTGAAGCGCGTAAGTCCATGGTTGGTTGAGTTGGTATCTAACGTGCCAGTCATCCATCTGGCACCATTCTCTCCACCAAGGAAGAAGCTTAGGTTTCCACAACACCCAGAGTTTCCCCTTGATGTTCAATTTCCGATACCAACGTTTTCAGGCAACCCTTTTGGGTCTAGCACTAGCAGCCCCTTGTGTTGTCTATCTGATAATGCTCCTGCAGGCATACAGGGAGCCAGGCATGCTCAAATTGGAATATCTTTGTCAGATCTCCACCTTAACAATAATAAGCTGCAGTTGGGGTTGCTTCCAACTAACGTTCGCCACCTTGATTTGCACCCTGGGATTTCTAATGGCAACATCACCAACCATGGTAAGAGTAAAGAAAGTCTATCATGCTTGCTGACCATGGGAAGTTCACGCAAGAGTTTGGAGAAATCTGATCAAGCGAAGAGACACCAATTTTTGCTTTTTGGTCAACCGATACTCACTGAGCAACAAATTTCTAGATCTTCTAGTGATGTGTTGTCTCAAAATTGCATCGCAACAGATGATGAGAATAAGGAGAAGAAGGAGAAGGGATTCCTTAGTGACTCCCAATCTTCAGCTTCCCCAGGAAAGTCGTGTTCCACAGCGGAGTTCTCTTGGCAACTCGGTTCTGATACCAGTCATTGCAAGGTTTTCATGGAGTCAGAAGATGTGGGACGGACCCTTGACTTGTCCTGTCTTGGTTCTTATGATGAGCTGTACATGAGACTGGCTAACATGTTTGGAATAGAACGGTCTGAGATGTTGAGTCATGTTCTCTACCGCGATGCAGCCGGTGCTCTTAAACAAACTGGAGAAGAACCATTCAGTGAGTTCATGAAGACAGCAAAAAGATTGACAATTCTGACTGATTCAAGTAGCAAAGATAGTAGAAGGGTTTGGATCACAGGAACTCGGAATGCTGAACATGGATTGGATGCTACTTCAAATAAGACAGGTCCTATGAGTATATTTGCTTAA 2100 0.5062 MKETEKSLDPQLWHACAGGMVQMPPVNSKVFYFPQGHAEHAQYNLDFGASRIPIPPLVLCRVAAVKYLADPETDEVFARLRLVPLRNTELDHEDGDKVDGNGAEGSEKPASFAKTLTQSDANNGGGFSVPRYCAETIFPRLDYSAEPPVQTVIAKDVHGEVWKFRHIYRGTPRRHLLTTGWSSFVNQKKLVAGDSIVFLRAENGDLCVGIRRAKRGGVGGPEAPCGWSSGGGGGGGLGIGAYGAFSAFLREESKVVRNGCGRPKVSGESVREAIALAANNQPFEVVYYPRANTPEFCIRTSAVRGAMRIQWCSGMRFKMPFETEDSSRISWFMGTIASVQVLDPIRWPNSPWRLLQVTWDEPDLLHNVKRVSPWLVELVSNVPVIHLAPFSPPRKKLRFPQHPEFPLDVQFPIPTFSGNPFGSSTSSPLCCLSDNAPAGIQGARHAQIGISLSDLHLNNNKLQLGLLPTNVRHLDLHPGISNGNITNHGKSKESLSCLLTMGSSRKSLEKSDQAKRHQFLLFGQPILTEQQISRSSSDVLSQNCIATDDENKEKKEKGFLSDSQSSASPGKSCSTAEFSWQLGSDTSHCKVFMESEDVGRTLDLSCLGSYDELYMRLANMFGIERSEMLSHVLYRDAAGALKQTGEEPFSEFMKTAKRLTILTDSSSKDSRRVWITGTRNAEHGLDATSNKTGPMSIFA* 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00468 699 FunFam Auxin response factor 311 384 - -
Lapu5g00468 699 Pfam Auxin response factor 274 356 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu5g00468 699 Gene3D - 583 670 - -
Lapu5g00468 699 FunFam Auxin response factor 110 214 - -
Lapu5g00468 699 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 6 665 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu5g00468 699 ProSiteProfiles B3 DNA-binding domain profile. 112 214 IPR003340 GO:0003677
Lapu5g00468 699 CDD B3_DNA 111 212 IPR003340 GO:0003677
Lapu5g00468 699 Gene3D - 311 384 - -
Lapu5g00468 699 SMART B3_2 112 214 IPR003340 GO:0003677
Lapu5g00468 699 Pfam B3 DNA binding domain 112 213 IPR003340 GO:0003677
Lapu5g00468 699 Gene3D - 110 214 IPR015300 -
Lapu5g00468 699 SUPERFAMILY DNA-binding pseudobarrel domain 107 213 IPR015300 -
Lapu5g00468 699 ProSiteProfiles PB1 domain profile. 586 666 IPR000270 GO:0005515
Lapu5g00468 699 MobiDBLite consensus disorder prediction 551 571 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00468 Lapu-Chr5 4039116 4043391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00468 4 668 B3 DNA Binding Superfamily AT4G30080 60.557 0.0 777
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu5g00468 B3 4.5e-22 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00468 - - gmx:100778135 1273.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00468 5 4039116 4043391 Lapu5g00468 5 4039116 4043391 ECH
Lapu5g00468 5 4039116 4043391 Lapu11g00445 11 7775302 7779144 PCT