Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00461 ATGTTTACAATGCGATTGCTATGGTGGCTAAGGCTGCCGCTACTCATACTGATTCAACTTTTATTTCCCAACAGATCAACCTACGAATTATACGCTGAGGCTTTGATCAGTTTCAAAGGTTCGCTTGGAGGTCCACAGCAATTAGGATGCAGCATTGTGAAATATCCATGTCAAATGCAATGGCCTTGTCTTGACTGCTATAAACTAAAAGATCCAGGTGGAGTAACAGCAAAGATAGATGGGAATAATGACATTCCAACACTTACACCTCTTCCAGAAACTCAGGATAGAAAATCAGGTGGAAGAAGGAGTTCTGCCATAATTGGTAGCGTTATTGCTGCCTCAGTTGTCGTTGCAATAGTGGTGACTGTCTATATCTGCTTGATGCGTGTTAAAAGATCTATGAGGCAAACGTCTGAGGTTGCTTCTTCTATGCCATCTCCCACTGTTGAGATGGGAAGAGTCAACACGCAGCATGTTACTGCTTTCTCTCCACAAAACACAAGGCAGTTAACAATTTTGGAACTGGAACAAGCTACACGAAATTTCAGTCATAATAATATCATAGGTCAAGGTGGATTTGGTTTTGTATACAAGGGTTTGCTTCAAGATGGTTCTATTGTGGCTATAAAAAGGCGTCTGTTTTCTCTGACACAAGATTTCGTCCTTGAGGTGAAACAGATAGCTCACATACACCACATCCATCTTGTCAAGCTCATAGGCTATTATGAAGATAGTCATCAACAATTACTTGTGTATGAATATCTCCCTAACGGCAATGTAGGGAGTCACCTATATGATAATGAAGGTTTTCCTGTTGGAAGATTAGACCTGTGGCGAAGGTTGTCTATTGCTTTAGGCGCATCTAAAGGAGTGGAACATCTTCACAGTTTGGTTCCTCCTTTGTTTCACACAAACTTTAGAACTAGCAATGTTCTGCTAGATGAAAATTATACTGCCAAGGTTTCTGATTATGGATTCTGCAAATTGCAAACACAAGTTGATCAGGCAGGCCCGTCCTCAAATGTAGACTGTTTTCTTGACCCAGAGTTGAGCTTTCCTCAAAACTATTCGGAGAAGAGTGATGTATACAGTTTTGGGGTCTTCTTACTAGAGTTGATTAGTGGCTGTGAAGCACATAACAAAAACATGTTACACCCAGATGAAAATATAGTATCTCAGGCAAAAAATTGTGTTGACTTGGACAAATTTGTTGACATAACACTGGGATACCAAGAAAAGCATGGTGCTAGACGAATATTGATGTTGGCATTGCTATGTGTGGATGCTACTTTCAGAAGACCATCAATGGCGCAAATTGTGCTAGAGTTGGAGCGGATTCAAAGAGAAATTGCACCCATGCATTCTCAATTCAACGATGAGATCGGTGCCGTGACTCTTGGGAGTGAGCTCTTCCAATAA 1422 0.4093 MFTMRLLWWLRLPLLILIQLLFPNRSTYELYAEALISFKGSLGGPQQLGCSIVKYPCQMQWPCLDCYKLKDPGGVTAKIDGNNDIPTLTPLPETQDRKSGGRRSSAIIGSVIAASVVVAIVVTVYICLMRVKRSMRQTSEVASSMPSPTVEMGRVNTQHVTAFSPQNTRQLTILELEQATRNFSHNNIIGQGGFGFVYKGLLQDGSIVAIKRRLFSLTQDFVLEVKQIAHIHHIHLVKLIGYYEDSHQQLLVYEYLPNGNVGSHLYDNEGFPVGRLDLWRRLSIALGASKGVEHLHSLVPPLFHTNFRTSNVLLDENYTAKVSDYGFCKLQTQVDQAGPSSNVDCFLDPELSFPQNYSEKSDVYSFGVFLLELISGCEAHNKNMLHPDENIVSQAKNCVDLDKFVDITLGYQEKHGARRILMLALLCVDATFRRPSMAQIVLELERIQREIAPMHSQFNDEIGAVTLGSELFQ* 474
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00461 473 ProSitePatterns Protein kinases ATP-binding region signature. 189 211 IPR017441 GO:0005524
Lapu5g00461 473 Gene3D Phosphorylase Kinase; domain 1 145 255 - -
Lapu5g00461 473 FunFam receptor-like serine/threonine-protein kinase NCRK 156 255 - -
Lapu5g00461 473 Gene3D Transferase(Phosphotransferase) domain 1 256 466 - -
Lapu5g00461 473 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 114 447 IPR047117 -
Lapu5g00461 473 SUPERFAMILY Protein kinase-like (PK-like) 162 451 IPR011009 -
Lapu5g00461 473 ProSiteProfiles Protein kinase domain profile. 183 432 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00461 473 Pfam Protein tyrosine and serine/threonine kinase 186 398 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00461 Lapu-Chr5 3960002 3962782 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00461 104 447 Receptor kinase-like Gene Family AT1G79620 35.813 1.40e-54 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXa Lapu5g00461 PK_Tyr_Ser-Thr 8.2e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00461 - - gmx:100815066 771.926