Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00458 ATGAGTGCTCAACAAAAAGAAACGGAAAAACATGACGCGCTTTTGTCGAATCCAACGGTGGATGATACAATGGGGGTAACCGATGAAACCTCGCATGTTAACGATCAGTGGAAGCGAGAGAGTCTTCATCTGGAAATACCGACCAGAACATCAGAAGAATGCTGTCAGGATTTTGTCCGAATAAGGATGCCACTGACGCCAAGTCCAACTCCTAGTAATAAGAGAGTGAATTTTCTTGTGACTTCTCGTTCTGTTGATGCTCCAAGACCTTCTTCTTCTTCTTCTGCTTCCAGAGGCAAATCATCCATGAGAAACATCTTACCAAGATTCGGCTTCAAGAATCGTCAATCGCTTGATGTTGAAAAAGCTGTTACTCCGGCTTCAGAAGCTTCTTTTTCTGGCTATCAAGAAAAGTCCTCAATCCCCAGATCAGTGTCTCTCACCAAGTTATTCACTCCTAAGATTAAGAGAACGTCTTCGTTACCTGTAGAAGAAATTGGGCGTGCAAACGTAGAATCTGCTCTGGGTGGAACCCTTGGTGCTTCTCCATGGGGAAGAGAGACTCAGGGGATGATAGCTCGTTCCCGTTCAGTGCCTGTCAATAGCAAAGAAAAGGGCATAAGGAGAATGGATTCAGTTTTTCGCGTCATTCCTTCCACTCCTTGCGTAAATGAAGTGAATGAATCAACAAAGGATACTGTAATAGAAAATGGTGGTGGTGAAGATATTGCTGAAGAGGAAGCGGTGTGCAGAATTTGTCTGATTGATCTATGTGAAGGAGGTGAGACATTAAAGATGGAATGCAGCTGCAAAGGTGAACTTGCTCTGGCTCACCAAGAATGTGCTGTTAAATGGTTTAGTATCAAGGGTAACAAGACCTGTGATGTGTGCAAGGAGGAGGTTCGGAACCTCCCTGTCACTCTCTTACGGATCCGAAGTGTTCAAACTCAGAATACTGGAGCAAGGTCCGAGCAGGGAGATGAATACAGGGTTTGGCAGGAACTCCCAGTGCTTGTTATTGTCAGCATGCTTGCCTATTTCTGTTTCCTTGAGCAGCTGCTGGTTGGAAAAATGGGAACCAAGGCAGTTTTCGTCTCTCTTCCATTTTCCTGTGTACTGGGTCTACTCTCCTCCGTGACCTCAACGACCATGGTGAAGAGCAGGTTCATCTGGTTATATGCATCTGTCCAATTTATTTCGGTGGTGCTATTCGCCCATATATTTTACCCCTTGGTTGGTAAGCATGCGGTTTTGTCGATCCTGCTTGCAACATTTGCTGGGTTTGGTGTTGTGATGAGTGGAAGTTCAATTGTTTTGGAGTTTTCTAGATGGAGAAGAAGATGGCAAGCTTTATCAGAGCAGCAGCGTGGTTCTTCAGCGATGACACAAGAAGGGCTATCAAATCGTATTGTCAACTAA 1419 0.4482 MSAQQKETEKHDALLSNPTVDDTMGVTDETSHVNDQWKRESLHLEIPTRTSEECCQDFVRIRMPLTPSPTPSNKRVNFLVTSRSVDAPRPSSSSSASRGKSSMRNILPRFGFKNRQSLDVEKAVTPASEASFSGYQEKSSIPRSVSLTKLFTPKIKRTSSLPVEEIGRANVESALGGTLGASPWGRETQGMIARSRSVPVNSKEKGIRRMDSVFRVIPSTPCVNEVNESTKDTVIENGGGEDIAEEEAVCRICLIDLCEGGETLKMECSCKGELALAHQECAVKWFSIKGNKTCDVCKEEVRNLPVTLLRIRSVQTQNTGARSEQGDEYRVWQELPVLVIVSMLAYFCFLEQLLVGKMGTKAVFVSLPFSCVLGLLSSVTSTTMVKSRFIWLYASVQFISVVLFAHIFYPLVGKHAVLSILLATFAGFGVVMSGSSIVLEFSRWRRRWQALSEQQRGSSAMTQEGLSNRIVN* 473
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00458 472 MobiDBLite consensus disorder prediction 81 102 - -
Lapu5g00458 472 Pfam RING-variant domain 250 297 IPR011016 GO:0008270
Lapu5g00458 472 SMART ringv_2 249 298 IPR011016 GO:0008270
Lapu5g00458 472 ProSiteProfiles Zinc finger RING-CH-type profile. 242 304 IPR011016 GO:0008270
Lapu5g00458 472 PANTHER OS02G0165000 PROTEIN 6 462 - -
Lapu5g00458 472 SUPERFAMILY RING/U-box 246 301 - -
Lapu5g00458 472 MobiDBLite consensus disorder prediction 1 32 - -
Lapu5g00458 472 MobiDBLite consensus disorder prediction 1 16 - -
Lapu5g00458 472 MobiDBLite consensus disorder prediction 81 105 - -
Lapu5g00458 472 CDD RING_CH-C4HC3_MARCH 250 298 - -
Lapu5g00458 472 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 305 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00458 Lapu-Chr5 3922936 3927777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00458 247 304 C3H Transcription Factor Family AT2G37950 47.458 2.89e-13 67.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00458 - - gmx:100782610 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00458 5 3922936 3927777 Lapu5g00458 5 3922936 3927777 ECH
Lapu5g00458 5 3922936 3927777 Lapu11g00459 11 7915882 7922113 PCT