Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00456 ATGGGAGATTATAAGAGTTTTTCATTTTCCAAAATGATGGGCTGCTGTGGTTGCTTCGGATTTGTAAAAAAACCAAGACGGCGTCGGGCTAAACGTAGCATCAACAATTTTCTCTCCCATGGCCTATTATATGATGGAGAAACTGAATGTGATGAGTCGTGTAGTGGTGATGTTACTAGTAACGCCACCAGTGGAGATGATAATGAGGTTCAAGCTGTACGCAACCGTTCCGAGGATATTTTGAACTTTAGAGCTGAGAATGGCATGGTTTGTAGACCATTTCCTGTCAAGGAGACTTTCGAACTTGTTCGCTCAGAGGATGAAAATGGGAACAAGATGATAAATGAATATGTCCGAGAGTATAAAATTGGTTCTGGAAGCTATGGCAAAGTGGCTCTTTATCGAGGTTGCTTTGACGGAAAACATTATGCAATTAAGGCCTTTCACAAGTCTCATTTACAAAAGCTTCGAGTTGCACCGTCTGAGACTGCCATGACTGATGTTCTGAGGGAGGTACTGATTATGAAAATGGTGGAACATCCTAATATAGTCAATCTCATTGAAGTAATTGATGACCCGGAGTCAGATGACTTCTACATGGTACTTGAATATGTGGAAAGCAAATGGGTGTGTGAGGGTACAGGTCGTCCTTGTGCATTAGGTGAAGAGACTGCTAGGAAATACTTGCGTGATATAGTCTCAGGATTAACATATCTCCATGCTCATAATATAGTGCATGGGGATATAAAACCGGATAATCTGTTGATTACTCGTCATGGCACAGTAAAGATAGGGGATTTCAGTGTCAGCCAGGCTTTTGAGGATGGCAATGATGAACTTCGTCGATCACCTGGCACTCCTGTTTTCACTGCACCAGAATGTTGTTTAGGTCTTACTTATCATGGTAAAGCTTCTGACACGTGGGCAGTAGGAGTTACTTTGTACTGTATGATCTTGGGTGAATACCCATTTCTCGGAGACACACTTCAAGATACATATGACAAAATAGTCAATGATCCCTTACTTCTGCCAGACGACATTAACCCCCAGTTAAAGAACTTAATAGAAGGATTACTGTGCAAAGATCCAGAACTAAGGATGACATTGGGCGATGTTGCTGAGCATGTCTGGGTTATTGGAAATGATGGGCCAATTCCTGGGTACTTGTGTTGGTGTAAACGCAAGAGCCTGGTGGTGACTGAAGATTTTGATGGTAGCAATAGACCTGCTTGA 1233 0.4217 MGDYKSFSFSKMMGCCGCFGFVKKPRRRRAKRSINNFLSHGLLYDGETECDESCSGDVTSNATSGDDNEVQAVRNRSEDILNFRAENGMVCRPFPVKETFELVRSEDENGNKMINEYVREYKIGSGSYGKVALYRGCFDGKHYAIKAFHKSHLQKLRVAPSETAMTDVLREVLIMKMVEHPNIVNLIEVIDDPESDDFYMVLEYVESKWVCEGTGRPCALGEETARKYLRDIVSGLTYLHAHNIVHGDIKPDNLLITRHGTVKIGDFSVSQAFEDGNDELRRSPGTPVFTAPECCLGLTYHGKASDTWAVGVTLYCMILGEYPFLGDTLQDTYDKIVNDPLLLPDDINPQLKNLIEGLLCKDPELRMTLGDVAEHVWVIGNDGPIPGYLCWCKRKSLVVTEDFDGSNRPA* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00456 410 Pfam Protein kinase domain 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00456 410 FunFam Serine/threonine-protein kinase GRIK2 107 407 - -
Lapu5g00456 410 PANTHER MAP/MICROTUBULE AFFINITY-REGULATING KINASE 75 380 - -
Lapu5g00456 410 Gene3D Transferase(Phosphotransferase) domain 1 216 384 - -
Lapu5g00456 410 SUPERFAMILY Protein kinase-like (PK-like) 113 389 IPR011009 -
Lapu5g00456 410 ProSiteProfiles Protein kinase domain profile. 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00456 410 ProSitePatterns Protein kinases ATP-binding region signature. 123 146 IPR017441 GO:0005524
Lapu5g00456 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 244 256 IPR008271 GO:0004672|GO:0006468
Lapu5g00456 410 Gene3D Phosphorylase Kinase; domain 1 111 214 - -
Lapu5g00456 410 CDD STKc_LKB1_CaMKK 123 378 - -
Lapu5g00456 410 FunFam Serine/threonine-protein kinase Ssp1 111 213 - -
Lapu5g00456 410 SMART serkin_6 117 378 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00456 Lapu-Chr5 3894543 3901018 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00456 123 385 CBL-interacting serine-threonine protein kinases AT5G35410 33.840 9.29e-43 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CAMKL-LKB Lapu5g00456 Pkinase 9.7e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00456 K00908 - gmx:100776013 784.252