Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00453 ATGATGTCTGGTGAAGCAATATCTGTCCCTTCCAACCTCAGAGATTCCTCGGTCCAAGTTCATGAACCAAACTCAAACCCTAATCCTAACCCTAATCCAAACTCGTCAGTTAAGAGAAAAAGAAGCCTACCCGGAACACCAGATCCGAATGCAGAAGTGATTGCTCTGTCGCCAAAGTCGCTGATGGCGACGAACCGGTTCATCTGCGAAGTGTGCAACAAGGGTTTTCAGAGAGACCAGAACCTCCAGCTGCATCGGCGAGGGCACAATCTGCCGTGGAAGCTGCGGCAGAGAACGAAGGAAGAGGTGAGGAAGAAGGTGTACGTGTGTCCAGAGAAGAGTTGCGTGCACCATGACCCTTGCAGAGCCCTGGGAGACCTCACTGGGATAAAAAAACACTTCAGCAGAAAGCACGGTGAGAAGAAGTGGAAGTGCGAAAAGTGCTCCAAGAAATATGCTGTTCAATCTGACTGGAAAGCCCATAACAAGATTTGTGGGACTAGACAGTACAAATGTGACTGTGGCACGATATTCTCCAGGAAGGACAGCTTTGTAACGCATAGAGCCTTTTGTGACTCTATGGTGGAACAAAGTGCGAGACTTCCGGCAGTTTTATCAAACCTTGGAAACGATTTCTTGATGAACGCTCAAGCCCCGAGGGTACTGCCTCAGGGTTTACAATTACACGGGTTTCATTCAGAGTTTGGTGGGCCAGGCCCAGAATCATACATGGGGAATTTTGCAGATGCCGAACATGTTGAACACAAGCTGAGGTTGCCGCTATGGCTAGACCAGACAAATCTTCAACTTAACCATCCTCTTAGCGTTGTTCCAAGCAACTCAACTGTATTCTCACCTGGAACAACCTTGCCTGAAACAAACAACATGTTCGGGACATCGTCGTCACAGGCACAGTGGGCGAATTATCGATACCCAGAAGCATCTTTCACGTGTGCCAGTATTTCTGTGCCTCATGGACTGAAGCTGGAGCAAGAAGAAAACAAAGGGGAGTTGTCGCATAGCGTGAGCTCTTTGTACCCAAGTCACATGGAATCTACAAGGATGAGTGGTAGCTCACCCTTCGACAACTCCAACTTTGGCTTGTTGGAACCGAACATGTCAAGCACGTCATCCAACAACCATAGCAACGTGGTTGAAATTCAGAAGATATTCAAGCAAACAAACCAGCCTGAAAACTTCAACCTCATGGTGAATTCCCAGGGAAGCGGCAACATGGGAGGTGGGTTTTCCTTGAGTTGCAGGAAGAGTTTGGAGCATATGGTGATGCCGCGTATCGAAGAGTGGGAAAGTGGAGAAGCAGAAATAATGGCGAAGCAAGTACATTCAAGTTCAAACACTGAGGAGCACTTAACCAAAGACTTCATGGGTGTTGGAGATGGGTCACTAAGCAGGCAAATGGGGCCAGTGATGAACCTGCAAAGCCAGTTCCGTGGACAGTACTGA 1464 0.4816 MMSGEAISVPSNLRDSSVQVHEPNSNPNPNPNPNSSVKRKRSLPGTPDPNAEVIALSPKSLMATNRFICEVCNKGFQRDQNLQLHRRGHNLPWKLRQRTKEEVRKKVYVCPEKSCVHHDPCRALGDLTGIKKHFSRKHGEKKWKCEKCSKKYAVQSDWKAHNKICGTRQYKCDCGTIFSRKDSFVTHRAFCDSMVEQSARLPAVLSNLGNDFLMNAQAPRVLPQGLQLHGFHSEFGGPGPESYMGNFADAEHVEHKLRLPLWLDQTNLQLNHPLSVVPSNSTVFSPGTTLPETNNMFGTSSSQAQWANYRYPEASFTCASISVPHGLKLEQEENKGELSHSVSSLYPSHMESTRMSGSSPFDNSNFGLLEPNMSSTSSNNHSNVVEIQKIFKQTNQPENFNLMVNSQGSGNMGGGFSLSCRKSLEHMVMPRIEEWESGEAEIMAKQVHSSSNTEEHLTKDFMGVGDGSLSRQMGPVMNLQSQFRGQY* 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00453 487 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 19 471 IPR031140 -
Lapu5g00453 487 Gene3D Classic Zinc Finger 122 200 - -
Lapu5g00453 487 SMART c2h2final6 108 138 IPR013087 -
Lapu5g00453 487 SMART c2h2final6 143 163 IPR013087 -
Lapu5g00453 487 SMART c2h2final6 67 89 IPR013087 -
Lapu5g00453 487 FunFam protein indeterminate-domain 12-like 46 114 - -
Lapu5g00453 487 Gene3D Classic Zinc Finger 46 118 - -
Lapu5g00453 487 FunFam protein indeterminate-domain 5, chloroplastic-like 121 200 - -
Lapu5g00453 487 ProSitePatterns Zinc finger C2H2 type domain signature. 69 89 IPR013087 -
Lapu5g00453 487 ProSiteProfiles Zinc finger C2H2 type domain profile. 67 89 IPR013087 -
Lapu5g00453 487 MobiDBLite consensus disorder prediction 1 41 - -
Lapu5g00453 487 MobiDBLite consensus disorder prediction 1 51 - -
Lapu5g00453 487 Pfam Zinc-finger double-stranded RNA-binding 67 89 IPR022755 -
Lapu5g00453 487 SUPERFAMILY beta-beta-alpha zinc fingers 66 163 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00453 Lapu-Chr5 3865868 3868824 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00453 9 200 IDZ Gene Family AT3G50700 74.490 1.82e-110 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00453 zf-C2H2_jaz 8.3e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00453 K25870 - gmx:100811687 753.821