Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00452 ATGGAGGGAGATCAACTGGGCTCTAGTTACTCTTTTCCACCTGGCTTTAGATTCCACCCTTCTGATGAAGAACTCATAGTTCATTACCTGCAAAACAAAATCAGTTCACGTCCACTTCCAGCATCTATTATAGCTGAAATAGATCTCTACAAGTATAATCCGTGGGAGCTACCCAATAAGTCTCTGTTTGGAGAAGAAGAGTGGTATTTCTTTAGCCCAAGAGACAGAAAGTACCCAAATGGGTTGAGGCCAAACAGGGCTGCAGCCTCAGGATACTGGAAGGCAACAGGAACTGACAAGCCAATTCTTTCTTCTAGTGGATCAAAGCGAATAGGAGTGAAGAAAGCTCTGGTGTTTTATTCAGGTCGTCCTCCTAAGGGATCTAAGACGGATTGGATCATGAATGAATATAGATTGATTGACACAACCACCAAATCCTCCAGGCTAAAAGGCTCCATGCGGTTGGATGACTGGGTACTATGCCGGGTTCGACATAAAGGCTACTATTCGAAGATATCATGTGAAAATCAAGAGAATCCTAGTGAACTAAACCTGTCAGCAAAACTTCCGAGGAGTGAAGAATATCCAACAAACATGAACTGTCGGGCTGACATGATAACTGATTATCAATACAAAGACTATCAGATCATAGCCTCTATTCTTGTTGGTGCACCTGTATCTCCCACTGAAAACATGCCTAATATGAACTTTAAGGGCTGCAAAGGCACCAATCTAGTTTCAGTTTGTGAAGATGGTTTCACTAAAGTGAATTCTCAAATGACATTTCCTTCTTTGGACAGTTACTTCAACCCACTGACAAGAAAATCTAATGAAGATGAACAGCATGGAAATCTCATTTCTTTTAACAGGAAGTTCAACACTGAGAACAAAGTGGATGAATCACCTAGCAGGGTGTTGACCAGTAGAGAATTGAACTGCTATAACCAAAACCAGTCTCAAGATGAAATTTTCAGTGGGAACCCAACAGATACTGGCATTAATTTTCAAGAGCTTAACGATTTAGTGTTTACAGGAAGGTACCCTCAGTGA 1050 0.4124 MEGDQLGSSYSFPPGFRFHPSDEELIVHYLQNKISSRPLPASIIAEIDLYKYNPWELPNKSLFGEEEWYFFSPRDRKYPNGLRPNRAAASGYWKATGTDKPILSSSGSKRIGVKKALVFYSGRPPKGSKTDWIMNEYRLIDTTTKSSRLKGSMRLDDWVLCRVRHKGYYSKISCENQENPSELNLSAKLPRSEEYPTNMNCRADMITDYQYKDYQIIASILVGAPVSPTENMPNMNFKGCKGTNLVSVCEDGFTKVNSQMTFPSLDSYFNPLTRKSNEDEQHGNLISFNRKFNTENKVDESPSRVLTSRELNCYNQNQSQDEIFSGNPTDTGINFQELNDLVFTGRYPQ* 350
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00452 349 ProSiteProfiles NAC domain profile. 12 166 IPR003441 GO:0003677|GO:0006355
Lapu5g00452 349 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Lapu5g00452 349 Gene3D NAC domain 21 169 IPR036093 GO:0003677|GO:0006355
Lapu5g00452 349 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 279 - -
Lapu5g00452 349 SUPERFAMILY NAC domain 9 166 IPR036093 GO:0003677|GO:0006355
Lapu5g00452 349 FunFam NAC transcription factor 21 169 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00452 Lapu-Chr5 3852565 3854750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00452 5 177 NAC Transcription Factor Family AT1G69490 65.318 1.17e-81 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Lapu5g00452 NAM 2.1e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00452 - - vra:106759457 671.003