Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00448 ATGGAAATTGATCTGAACTATGCAGTGACTGAGGCTGAGAAGAATGCGTCTTGCAATGGGGAGTGTGAGAAAGGTGCCGCTTGCGTTTGCTCTCTGTCCTCTCCTACTTGTTCATCTTCTGGTTCCTCCTCCACACGTATGTCCTCTTCTTCTCTTGAGCTTTGGCACGCTTGTGCTGGTCCCCTCACTTCCCTCCCAAAGAAAGGGAATGTGGTGGTGTATTTCCCCCAAGGGCACTTAGAACAAGCTTCATCTTTCTCTCCCTTTTCACCAATGGACATACCAACCTATGATCTTCAGCCACAGATCTTCTGTAGAGTTGTCAATATTCAGTTACTTGCCAATAAGGAGAATGATGAGGTTTATACGCAGGTCACTTTGCTTCCCCAGACTGAGTTGGCAGGGACGTATTTGGAGGGAAAAGAGCTTGAGGAAATGGGAGCAGATGAAGAGGGAAATGAAGGAACACCTACAAAATCTACTCCTCACATGTTCTGCAAAACACTCACAGCCTCAGATACCAGCACTCATGGGGGGTTTTCTGTCCCTCGCAGAGCTGCTGAAGACTGTTTTCCTCCTTTGGATTATAAGCAGCAAAGACCCTCTCAGGAGCTTGTCGCCAAAGACCTGCATGGTGTGGAGTGGAAATTTCGACATATTTACAGAGGTCAGCCAAGGCGGCATCTGCTCACTACTGGTTGGAGTATTTTTGTTAGCCAAAAGAATCTTGTTTCTGGAGACGCAGTTCTCTTTCTAAGGGGTGAAAATGGTGAATTGAGATTGGGAATCCGAAGAGCTGCTCGACCAAGAAATGGTCTTCCTGAATCAATTATTGGTAGCCAGAATTATTATCCCACTTTCCTTTCTTCTGTGGCAAATGCTATATCCGCCAAAAGCATGTTTCATGTCTTCTACAGTCCAAGAGCAAGTCATGCGGATTTTGTTGTGCCCTACCAAAAATATGTCAAAAGCATAAAGAATCCAGTGACCATTGGGACAAGATTCAAAATGAGATTTGAAATGGATGAATCTCCGGAAAGAAGGTGTACTAGTGGTATAGTAACTGGAATGAGTGATTTGGATCCCCATAAATGGCCTAAGTCAAAATGGAGGTGCTTGATGGTCAGATGGGATGAAGATATCGAGATTAATAATCAAGATAGAGTATCTCCTTGGGAGATCGATCCTTCTGCATCTCTCCCCCCCTTGAGCATTCAATCCTCCAGAAGGCTGAAGAAACTGAGGCCAGGTCTTCAGGGTGCTTCACCCAGTCACCTCATCACTGGAGGCAGTGGGTTTATGGACTCTGAGGAGTCTGTAAGATCATCCAAGGTCTTGCAAGGTCAAGAAAATTCAGGTTTTATGTCACTATATTATGGATGTGACACAGTAACTAAGCAGCCAGAATTTGCATCAACTGGAGTGAGAAAGATTGCTGCTGCTGCTGAGTTTATGAGGTTTCACCCTTCTAGTTATGCAGGCTTCACGGAAACTAACAGGTTTCCAAGGGTCTTGCAAAGTCAAGAAATCTGTCAATTAAGATCGCTGACAGGAAAGGTTGATTTGAACTTTGGTGGCTGGGGCAAACCAAGTGTCAGTTGCACAAATTACAACCTGCATCAGGCAACCAAACCGAACTTTCACTCTTTAGGACCAGAAGTTATTCAAACTGCATATTTTCCTTATGGTGATATTCACAAAGCTGGCCAAGGTAGCGGCACCGGCATGTTGTGCTCTAAACCGACCAATTTCCAACGAGAGAATGTCCCATTTTACTCTCCATCCTCTCCGCCAGGGATCATGAGAAATGAAGTTGGACGGTCAGATGTCACAATCCCGAATGAGCAGAAGCTGCAGGACAATATTTCTGGTGCTGCTTCCTTAGGGGCAAACATGAGGATTCCAAATGATGACAATTTCAACGGGAAGGTAAATGCTTGTAAACTATTTGGATTTCCCTTGTCCGGGGAAACTACCACCCAAAATTTACAGAACTCGGCCAAAAGAAGTTGCACAAAGGTTCACAAGCAAGGTAGCTTAGTTGGAAGAGCCATTGATCTCTCAAGATTGAACAGCTACAGTGACCTGCTAACTGAACTAGAGAGACTATTTAGCATGGAAGGCCTTCTAAGAGATCCTAATAAGGGATGGAGAATCCTTTACACTGACAGTGAAAATGACATTATGGTTGTGGGGGATGACCCGTGGTATGAGTTCTGCGATGTGGTCTCGAAGATTCATATACACACACAAGAAGAAGTTGAGAAGATGACAATTGGGATGATGAATGATGATAGCCAGAGTTGTTTGGAACAGGCACCAGTGATGATAGAGGCTTCAAAGTCTTCCTCCGTTGGTCAGCCAGATTCTTCTCCAACAGTGGTTAGAATCTAG 2394 0.447 MEIDLNYAVTEAEKNASCNGECEKGAACVCSLSSPTCSSSGSSSTRMSSSSLELWHACAGPLTSLPKKGNVVVYFPQGHLEQASSFSPFSPMDIPTYDLQPQIFCRVVNIQLLANKENDEVYTQVTLLPQTELAGTYLEGKELEEMGADEEGNEGTPTKSTPHMFCKTLTASDTSTHGGFSVPRRAAEDCFPPLDYKQQRPSQELVAKDLHGVEWKFRHIYRGQPRRHLLTTGWSIFVSQKNLVSGDAVLFLRGENGELRLGIRRAARPRNGLPESIIGSQNYYPTFLSSVANAISAKSMFHVFYSPRASHADFVVPYQKYVKSIKNPVTIGTRFKMRFEMDESPERRCTSGIVTGMSDLDPHKWPKSKWRCLMVRWDEDIEINNQDRVSPWEIDPSASLPPLSIQSSRRLKKLRPGLQGASPSHLITGGSGFMDSEESVRSSKVLQGQENSGFMSLYYGCDTVTKQPEFASTGVRKIAAAAEFMRFHPSSYAGFTETNRFPRVLQSQEICQLRSLTGKVDLNFGGWGKPSVSCTNYNLHQATKPNFHSLGPEVIQTAYFPYGDIHKAGQGSGTGMLCSKPTNFQRENVPFYSPSSPPGIMRNEVGRSDVTIPNEQKLQDNISGAASLGANMRIPNDDNFNGKVNACKLFGFPLSGETTTQNLQNSAKRSCTKVHKQGSLVGRAIDLSRLNSYSDLLTELERLFSMEGLLRDPNKGWRILYTDSENDIMVVGDDPWYEFCDVVSKIHIHTQEEVEKMTIGMMNDDSQSCLEQAPVMIEASKSSSVGQPDSSPTVVRI* 798
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00448 797 CDD B3_DNA 163 265 IPR003340 GO:0003677
Lapu5g00448 797 SUPERFAMILY DNA-binding pseudobarrel domain 157 276 IPR015300 -
Lapu5g00448 797 SUPERFAMILY CAD & PB1 domains 672 749 - -
Lapu5g00448 797 SMART B3_2 165 267 IPR003340 GO:0003677
Lapu5g00448 797 Gene3D - 665 758 - -
Lapu5g00448 797 Pfam Auxin response factor 291 373 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Lapu5g00448 797 Pfam B3 DNA binding domain 165 266 IPR003340 GO:0003677
Lapu5g00448 797 ProSiteProfiles PB1 domain profile. 669 751 IPR000270 GO:0005515
Lapu5g00448 797 FunFam Auxin response factor 664 758 - -
Lapu5g00448 797 ProSiteProfiles B3 DNA-binding domain profile. 165 267 IPR003340 GO:0003677
Lapu5g00448 797 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 52 758 IPR044835 GO:0003677|GO:0006355|GO:0009725
Lapu5g00448 797 FunFam Auxin response factor 328 401 - -
Lapu5g00448 797 FunFam Auxin response factor 163 267 - -
Lapu5g00448 797 Gene3D - 329 401 - -
Lapu5g00448 797 Gene3D - 163 267 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00448 Lapu-Chr5 3806834 3814418 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00448 48 797 B3 DNA Binding Superfamily AT5G60450 59.948 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Lapu5g00448 B3 1.4e-21 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00448 - - gmx:100812909 1407.89