Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00440 ATGGATCCTTCTAGTGGAGAACCCCAGCAAATGTCTATCCAGTCAGTGGATAAGAAACCAAGGCCTCATCCAGAACAAGCTCTGAAATGCCCAAGATGCGACTCCACCAGCACAAAATTTTGCTACTACAACAATTACAGTCTTTCTCAGCCAAGATATTTCTGCAAATCTTGTAGGAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGGGGAGGATGCCGAAAGAAGAGATCATCATCATCAACATCGTTGAAGAGGGATCATGATCAGACCTTCACACCCAATCTTAACCCACTCACTACATTCCCTCAGTTGTCTTATGTCTCCAATGACTTTACTCTAGCATTAGCTAGACTTCAAAAAGAATCAAGTGAGCAACTGTGTTACAATGGCCATGAAATTTCTGCTTTGGGGAACCCCACAGGCTCCTTTTCTGATATTCTTGGCAATTCAGGCATGAATCCCTCTTCAGAAAACCCTTCATTTTTTGACGCAATTCGAACTGGGTTCCTTGAAACACAAAATCATCTTCAGAATTTGTATTACATGTATGGAAATGGGGATATGGGGGAGGTGAATAATGGCAACTCCGGTGGGGTTGGGGTCAGTGGAGAGATGATGCTCCATTATAATCAAGTGATGAGCAATGCAGCCACTCAATCAGTGAGTGCACTAATGAAGCAAGAACAGTGTGGTGGCAGTGAACAAAGTGAGAGGAAGTTGTTGCGGGGTTCGCCGTGGCAGCCTAATGCAGACACAACCATGGGTGAAATTGATTCAGGAAGAGCAATTGCAAGTTGGAACAGTTTCACATCTTCTTGGCATGGACTTCTCCATAGTCCCCTAATGTAG 864 0.4433 MDPSSGEPQQMSIQSVDKKPRPHPEQALKCPRCDSTSTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKKRSSSSTSLKRDHDQTFTPNLNPLTTFPQLSYVSNDFTLALARLQKESSEQLCYNGHEISALGNPTGSFSDILGNSGMNPSSENPSFFDAIRTGFLETQNHLQNLYYMYGNGDMGEVNNGNSGGVGVSGEMMLHYNQVMSNAATQSVSALMKQEQCGGSEQSERKLLRGSPWQPNADTTMGEIDSGRAIASWNSFTSSWHGLLHSPLM* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00440 287 MobiDBLite consensus disorder prediction 73 99 - -
Lapu5g00440 287 ProSitePatterns Zinc finger Dof-type signature. 30 66 IPR003851 GO:0003677|GO:0006355
Lapu5g00440 287 Pfam Dof domain, zinc finger 26 82 IPR003851 GO:0003677|GO:0006355
Lapu5g00440 287 MobiDBLite consensus disorder prediction 236 255 - -
Lapu5g00440 287 MobiDBLite consensus disorder prediction 1 16 - -
Lapu5g00440 287 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 17 213 IPR045174 GO:0003700|GO:0006355
Lapu5g00440 287 MobiDBLite consensus disorder prediction 1 28 - -
Lapu5g00440 287 ProSiteProfiles Zinc finger Dof-type profile. 28 82 IPR003851 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00440 Lapu-Chr5 3728378 3730377 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00440 26 287 C2C2-Dof Transcription Factor Family AT2G28510 37.993 4.16e-40 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu5g00440 zf-Dof 6.6e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00440 - - gmx:778104 444.121