Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00429 ATGGATCAATCAGAAAAATCGCCGAAGAAAATATCATCACTGAGATCATCATTTCCGAGAGATCCACGTGGCTCACTTGAAGTTTTCAACCCAAACACTTCAACTGCAACGAACCCGCGCGTGCGTTCACAGCCGCTTTGGAAATCGTTGACGGAGTCGGAGGAGCCGCGCAATGAAATCGCCGCCACGTCGTGGATGGCAATTAATCCGGCGCCGCGAGCAGACGTAGAATGCGGCGCGGCAGCGCAGAGGGCCGCGGAGTGGGGGTTGGTGCTCCGAACCGACACCGAGACCGGCAAGCCGCAGGGCGTGGCGGTGAGAAACTCCGGCGGCGAGGAGCCCAACGCTGCCAAACTTGCCGCCGCTGCTTCTTCTTCCAGGAAGAACTCTCAGAACTCCGCCAGAACCTCCGGTGACTCCTCCTCCGACGGCGGAGGCGGCGGGATTCCGAGAATTTCGGAGGACGTGATGGGGGCTCTGTCGGCTTTCCAACAAACTTTCGTGGTTTCGGATGCTACCAAACCCGATTACCCGATCCTGTACGCGAGTGCCGGGTTCTTTAGAATGACGGGTTATACGTCCAAGGAAGTTATTGGGAGAAACTGTCGGTTTTTACAGGGTGCGGATACTGATCCTGGTGACGTGGCAAAGATAAGGGAAGCATTGGAAGCTGGGAAAATTTACTGCGGAAGGCTATTGAATTACAAGAAAGACGGTACACCTTTCTGGAACCTTCTCACCATTTCACCCATTAAGGATGAAGATGGCAAGGTGCTCAAATTTATCGGAATGCAAGTGGAGGTTAGTAAACACACGGAGGGGTTGAAAGAGAAGACGCTTCGTCCCAATGGATTGCCCGAATCCTTGATTCGATACGATGCACGCCAGAAAGAGAAGGCTACAAACTCAGTATCTGAGTTGATGCAGATCATGAAGCGCCCCCGAGCATTGAGTGAATCCGCTAGCCGTCCCTCCATCAGAAAATCAGGATTTTCTGAGGAAGAAAAACAATCACAACATGAAGAAGTAGAAGAAGAGAAAGAGAAAGCACAAAAAACAGTGAGAAGAAAGTCTGAGAGTGGGGCTTCATTTGGACGCAAATCAGATGGAGGAAATAAAATTTCAATGCAACGAATCAGTGAAATGCCTGAAAATGAACAGAAAAACTCTCAGCGCCGTTCTTTCATGGGGTTCAGGCGGAAAAGTCAGTCTAACTATGAAAGCATGGAAAATGAAGTTATTGAGGATGTCAGTTCTGAGAGTGAGGATGACGAGAGGCCTGATAGTTTTGATGTGGATGACAAAGAAAAGCAGAGGGAAAAGAGGAAAGGTCTTGATCTTGCTACCACGCTTGAACGTATTGAGAAAAACTTTGTCATTACTGATCCAAGGCTTCCAGACAATCCAATAATCTTTGCATCGGATAGCTTCTTAGAGCTTACAGAATATAGTCGTGAAGAAATCTTGGGAAGGAATTGCAGGTTTCTTCAAGGACCTGAAACTGATCCAGCAACTGTGAGAAAAATTAGAGAGGCAATCGACAACCAAAAAGAAGTTACCGTGCAACTGATTAATTATACAAAGACTGGAAAGAAGTTCTGGAACCTGTTTCATTTGCAACCTATGCGTGATCAGAAGGGAGAAGTGCAGTATTTTATTGGTGTTCAACTAGATGGTAGTCAACACGTAGAGCCTCTTCACAACTGCATCGCAGAAGATACTACAAAGGAGGGAGAACAAATCGTCAAACAAACTGCAGAAAATGTTGATGTGGCAGTGAGAGATCTTCCGGATGCAAATATGAAACCAGACGATTTATGGACAAATCATTCAAAAGCAGTTTACCCCAAACCTCATAGGAAGGATAACCCTGCTTGGAAAGCTATCCAGAAGGTCCTAGAAAGTGGAGAACCGATAGGCTTAAAGCACTTTAGGCCGATTAAACCTTTAGGCTCAGGAGATACTGGCAGTGTGCATCTGGTGGAGCTACGTGGAACTGGTCAATATTTTGCCATGAAGGCTATGGATAAGGGTGTTATGCTCAATCGTAACAAGGTACATAGAGCTTGCGCAGAGAGAGAAATCCTTGACAAGCTGGACCACCCTTTTCTACCTGCATTATATGCTTCGTTCCAGACCAAAACACACGTTTGTTTGATAACTGATTATTGTCCTGGGGGAGAATTATTCCTGCTTCTTGACCAGCAACCAACTAAGGTTCTAAAGGAAGACGCTGTGAGATTTTATGCAGCTGAGGTGGTGATTGCATTGGAGTACCTTCACTGCCAAGGGATAATATATCGAGACTTGAAGCCTGAAAATGTGTTAATCCAGAGCAATGGGCATGTGTCCCTAACAGATTTTGATTTGTCATGTTTAACTTCTAGTAAGCCACAGCTTATAATTCCAGCTTCCAATTCAAAAAAGAAGAAGAAGAAACAGAAAAGTCAGGAAGTTCCAATGTTTATGGCTGAACCGATGAGAGCATCAAATTCTTTTGTCGGCACGGAAGAGTACATAGCTCCGGAAATTATAACTGGTTCAGGTCATACTAGTGCGGTTGATTGGTGGGCTCTAGGTATTCTTATATATGAAATGCTTTATGGATATACTCCATTCCGGGGAAAGACAAGGCAAAAAACGTTTGCAAATATTCTTCATAAGGATCTTAAATTTCCCAAAAGTAAACCGGTCAGCCTCCAGGGAAAGCAGCTAATTTATTGGTTGTTGCAAAGAGATCCCAAAGGCAGATTGGGGTCACGTGAAGGAGCTAATGAAATTAAACGTCATCCTTTCTTCCGGGGTGTCAATTGGGCACTAGTTCGTTGCATGAAACCTCCTGAACTTGATGCTCCTCTCTTACTGAAAACTGAAGAAGAAAAAGAAGCAAAAGATATAGATCCTGGACTAGAGGATTTACAGACAAATGTTTTCTGA 2937 0.4528 MDQSEKSPKKISSLRSSFPRDPRGSLEVFNPNTSTATNPRVRSQPLWKSLTESEEPRNEIAATSWMAINPAPRADVECGAAAQRAAEWGLVLRTDTETGKPQGVAVRNSGGEEPNAAKLAAAASSSRKNSQNSARTSGDSSSDGGGGGIPRISEDVMGALSAFQQTFVVSDATKPDYPILYASAGFFRMTGYTSKEVIGRNCRFLQGADTDPGDVAKIREALEAGKIYCGRLLNYKKDGTPFWNLLTISPIKDEDGKVLKFIGMQVEVSKHTEGLKEKTLRPNGLPESLIRYDARQKEKATNSVSELMQIMKRPRALSESASRPSIRKSGFSEEEKQSQHEEVEEEKEKAQKTVRRKSESGASFGRKSDGGNKISMQRISEMPENEQKNSQRRSFMGFRRKSQSNYESMENEVIEDVSSESEDDERPDSFDVDDKEKQREKRKGLDLATTLERIEKNFVITDPRLPDNPIIFASDSFLELTEYSREEILGRNCRFLQGPETDPATVRKIREAIDNQKEVTVQLINYTKTGKKFWNLFHLQPMRDQKGEVQYFIGVQLDGSQHVEPLHNCIAEDTTKEGEQIVKQTAENVDVAVRDLPDANMKPDDLWTNHSKAVYPKPHRKDNPAWKAIQKVLESGEPIGLKHFRPIKPLGSGDTGSVHLVELRGTGQYFAMKAMDKGVMLNRNKVHRACAEREILDKLDHPFLPALYASFQTKTHVCLITDYCPGGELFLLLDQQPTKVLKEDAVRFYAAEVVIALEYLHCQGIIYRDLKPENVLIQSNGHVSLTDFDLSCLTSSKPQLIIPASNSKKKKKKQKSQEVPMFMAEPMRASNSFVGTEEYIAPEIITGSGHTSAVDWWALGILIYEMLYGYTPFRGKTRQKTFANILHKDLKFPKSKPVSLQGKQLIYWLLQRDPKGRLGSREGANEIKRHPFFRGVNWALVRCMKPPELDAPLLLKTEEEKEAKDIDPGLEDLQTNVF* 979
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00429 978 CDD PAS 179 268 IPR000014 -
Lapu5g00429 978 Gene3D Transferase(Phosphotransferase) domain 1 728 946 - -
Lapu5g00429 978 SMART pac_2 229 271 IPR001610 -
Lapu5g00429 978 SMART pac_2 520 562 IPR001610 -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 27 51 - -
Lapu5g00429 978 FunFam Putative LOV domain-containing protein 728 945 - -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 373 412 - -
Lapu5g00429 978 ProSiteProfiles PAS repeat profile. 152 223 IPR000014 -
Lapu5g00429 978 PANTHER FLIPPASE KINASE 1-RELATED 344 952 - -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 1 58 - -
Lapu5g00429 978 FunFam Putative LOV domain-containing protein 166 322 - -
Lapu5g00429 978 CDD STKc_phototropin_like 642 952 - -
Lapu5g00429 978 SMART serkin_6 644 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00429 978 Pfam PAS domain 466 558 IPR000014 -
Lapu5g00429 978 Pfam PAS domain 173 269 IPR000014 -
Lapu5g00429 978 Gene3D Phosphorylase Kinase; domain 1 643 727 - -
Lapu5g00429 978 Coils Coil 333 360 - -
Lapu5g00429 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 173 265 IPR035965 -
Lapu5g00429 978 FunFam LOV domain-containing protein 432 596 - -
Lapu5g00429 978 ProSitePatterns Serine/Threonine protein kinases active-site signature. 765 777 IPR008271 GO:0004672|GO:0006468
Lapu5g00429 978 ProSiteProfiles PAC domain profile. 517 571 IPR000700 -
Lapu5g00429 978 FunFam LOV domain-containing protein 643 727 - -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 122 143 - -
Lapu5g00429 978 CDD PAS 458 558 IPR000014 -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 413 429 - -
Lapu5g00429 978 ProSiteProfiles PAS repeat profile. 443 516 IPR000014 -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 328 363 - -
Lapu5g00429 978 Pfam Protein kinase domain 646 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00429 978 Gene3D PAS domain 166 416 - -
Lapu5g00429 978 Gene3D PAS domain 431 596 - -
Lapu5g00429 978 ProSiteProfiles PAC domain profile. 226 280 IPR000700 -
Lapu5g00429 978 MobiDBLite consensus disorder prediction 99 151 - -
Lapu5g00429 978 ProSiteProfiles Protein kinase domain profile. 644 933 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00429 978 NCBIfam PAS domain S-box protein 468 558 IPR000014 -
Lapu5g00429 978 NCBIfam PAS domain S-box protein 179 272 IPR000014 -
Lapu5g00429 978 SUPERFAMILY Protein kinase-like (PK-like) 626 952 IPR011009 -
Lapu5g00429 978 SUPERFAMILY PYP-like sensor domain (PAS domain) 459 558 IPR035965 -
Lapu5g00429 978 SMART pas_2 154 223 IPR000014 -
Lapu5g00429 978 SMART pas_2 445 514 IPR000014 -
Lapu5g00429 978 ProSitePatterns Protein kinases ATP-binding region signature. 650 673 IPR017441 GO:0005524
Lapu5g00429 978 MobiDBLite consensus disorder prediction 312 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00429 Lapu-Chr5 3566484 3579972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00429 1 978 AGC Kinase Gene Family AT3G45780 69.472 0.0 1354
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Lapu5g00429 Pkinase 6.8e-65 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00429 K20715 - gmx:100817565 1732.61