Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00425 ATGTTTGCACACTCTACCACTGCATCACCCCTTCCTTCTTCACCTTCTTCACTCTTCCCTCACCTCACTGAATTCGACACCCTCTCACAACTCAACAACTCCGACACCAACTACTGCTACTACAACAACAGTAACAGTAACTGTAGCAGTGGCTATAGCAGTTATGGTGGGTCTCCCACTTCTGTGCCCACTCCCAACTTTATGCAGAGGAGTGTCAGCAGTAATTCCTTCAACTACAACAACAATGGCACCCACCACCCTTTTTCTGCTCTCTTCGCAGAATTGCTCGACTCCCATGATGCTCCAGTTAGAAGAGTTTGCAGTACCGGTGATCTCCAGGGGATTAATGGAATTCAACATAATCACCTCTCGGATAGTCCGTTATCAAGCGAAAGTAGTATGATCATAGAAGGTATGAACAGAGCCTGTAGATATAGCCCAGAGGAGAAGAAGGTGAGGATAGAGAGATACAGAAGCAAGAGGAACCAGAGGAATTTCAACAAGAAAATTAAGTATGCTTGTAGGAAAACATTGGCAGACAGCAGGCCACGCATTAGAGGAAGGTTTGCAAGGAATGATGAAATTGACAAGAACAGTTCAATCCAGTGGAGCCAAACTGGAGGGGAGGAAGAGGATGAAGAAGATGAGAATTGGTTCACTATCTTAGATTCCTTAGTTGCTGCAAATTTTGCTCAGGAGTCTCAAGGCAGTTGCTCCTCCTATGGTGTATTCTATTAG 738 0.4499 MFAHSTTASPLPSSPSSLFPHLTEFDTLSQLNNSDTNYCYYNNSNSNCSSGYSSYGGSPTSVPTPNFMQRSVSSNSFNYNNNGTHHPFSALFAELLDSHDAPVRRVCSTGDLQGINGIQHNHLSDSPLSSESSMIIEGMNRACRYSPEEKKVRIERYRSKRNQRNFNKKIKYACRKTLADSRPRIRGRFARNDEIDKNSSIQWSQTGGEEEDEEDENWFTILDSLVAANFAQESQGSCSSYGVFY* 246
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00425 245 Pfam CCT motif 152 192 IPR010402 GO:0005515
Lapu5g00425 245 ProSiteProfiles CCT domain profile. 150 192 IPR010402 GO:0005515
Lapu5g00425 245 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 4 57 220 IPR045281 GO:0009909
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00425 Lapu-Chr5 3524237 3526359 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00425 146 199 C2C2-CO-like Transcription Factor Family AT5G15850 46.296 2.29e-12 63.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Lapu5g00425 CCT 8.8e-18 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00425 - - gmx:102661609 326.635
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00425 5 3524237 3526359 Lapu5g00425 5 3524237 3526359 ECH
Lapu5g00425 5 3524237 3526359 Lapu11g00523 11 8629582 8631945 PCT