Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00406 ATGGTTCAACAGGAAGTGCGTAAAGGTCCATGGACAGAACAGGAAGACTTCAAATTGGTGTCCTTTGTTGGCTTGTTTGGAGACCGTAGATGGGACTTTATTGCTAAGGTATCAGGTTTGAATAGAACAGGTAAAAGTTGCAGATTACGGTGGGTTAATTACCTTCATCCTGGTCTCAAACGTGGAAAGATGACACCCCAGGAAGAACGTCTTGTGCTCGAGCTTCACTCAAAATGGGGAAATAGGTGGTCAAGAATTGCTCGGAAGTTACCAGGGCGCACTGACAATGAGATTAAGAACTACTGGAGGACTCTGATGAGGAAAAAGGCTCAGGACAAAAAAAGAGGAGAAGCTGCAGCATCACCACCAACACCTTCTTCTAGTGTTCATTCCTCAAGATCAATATCCTCAAAGAAGCATGCAGTGGATCCACATGCTTCAAAGAAGGCAGGAGAAGAGAGCTTTTATGACACAGGAGGTCCTAGTGTGATAGGATCAACCCAAGATGAGGGTCAAGGTGGGTTCTCTATGGATGATATATGGAAAGATATTGACATGTCAGAAGAGAACAACAGTTTTCTTCATGGGCACAGTGAAGAAGGTTGCAACTTCTCTTGCCCACAAGTGCTTTCTCCTTCTCCATCATCGTGGGAGTATTCTTCTTCTTGTGACCATCTGTGGGTGATGGATGAGGAAAGTCTGTTTTGCCCCATGAGTGAACCATATTTTTATGCATTAAGCGGCTAA 747 0.4431 MVQQEVRKGPWTEQEDFKLVSFVGLFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPGLKRGKMTPQEERLVLELHSKWGNRWSRIARKLPGRTDNEIKNYWRTLMRKKAQDKKRGEAAASPPTPSSSVHSSRSISSKKHAVDPHASKKAGEESFYDTGGPSVIGSTQDEGQGGFSMDDIWKDIDMSEENNSFLHGHSEEGCNFSCPQVLSPSPSSWEYSSSCDHLWVMDEESLFCPMSEPYFYALSG* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00406 248 SMART sant 60 108 IPR001005 -
Lapu5g00406 248 SMART sant 7 57 IPR001005 -
Lapu5g00406 248 MobiDBLite consensus disorder prediction 121 135 - -
Lapu5g00406 248 Gene3D - 63 123 - -
Lapu5g00406 248 SUPERFAMILY Homeodomain-like 6 102 IPR009057 -
Lapu5g00406 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 3 55 IPR017930 -
Lapu5g00406 248 ProSiteProfiles Myb-like domain profile. 3 55 IPR001005 -
Lapu5g00406 248 MobiDBLite consensus disorder prediction 109 178 - -
Lapu5g00406 248 CDD SANT 63 106 IPR001005 -
Lapu5g00406 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 56 110 IPR017930 -
Lapu5g00406 248 ProSiteProfiles Myb-like domain profile. 56 106 IPR001005 -
Lapu5g00406 248 Pfam Myb-like DNA-binding domain 61 105 IPR001005 -
Lapu5g00406 248 Pfam Myb-like DNA-binding domain 8 55 IPR001005 -
Lapu5g00406 248 MobiDBLite consensus disorder prediction 136 152 - -
Lapu5g00406 248 CDD SANT 10 55 IPR001005 -
Lapu5g00406 248 PANTHER MYB TRANSCRIPTION FACTOR-RELATED-RELATED 3 120 IPR044676 GO:0003700|GO:0006355|GO:0043565
Lapu5g00406 248 FunFam MYB transcription factor 63 133 - -
Lapu5g00406 248 Gene3D - 8 60 - -
Lapu5g00406 248 FunFam Myb transcription factor 8 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00406 Lapu-Chr5 3354144 3355659 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00406 1 232 MYB Transcription Factor Family AT5G59780 58.159 5.87e-82 243
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00406 Myb_DNA-binding 1.4e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00406 K09422 - gmx:100776886 308.531
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu11g00548 11 8839841 8841638 Lapu5g00406 5 3354144 3355659 PCT