Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00404 ATGAAGAGAGGCAGAGAAGAGGGTGACTTAGACAGTATGGCTAACTGTTTGATGCTTTTGACCAAAGTTGGTGTGAGTGAAACCGATCCAACATCAAAGGGAAGGGATTGTAATATTGGTGATTTCAAGTGCAAAACTTGCAATAGAAGGTTTTCTTCTTTTCAAGCCCTTGGTGGCCACAGAGCAAGTCACAAGAAACCAAAGCTCATGATCACAGATCTTTCTTGCCACCACGAGTTACCTAGTCCAACCGCCAAACAACAACCTAGGATGCACCCATGTCCCATTTGTGGGCTTGAGTTTGCCATTGGACAAGCCTTGGGAGGTCACATGAGAAAACATAGAACAGCCATTAATGATGGTTTGTTGAATCGTAGAGATTCGGATTCTTTGTCCATCCTGAAGAAATCTAAAGATGGTGGAAGGTTGAATCTGTGTTTGGACTTGAACTTGATGCCATTGGAGGATGATGATCTTAAGCTCAACCTGAGGACACCCGTTCTCAATTGTTTCATTTGA 519 0.4316 MKRGREEGDLDSMANCLMLLTKVGVSETDPTSKGRDCNIGDFKCKTCNRRFSSFQALGGHRASHKKPKLMITDLSCHHELPSPTAKQQPRMHPCPICGLEFAIGQALGGHMRKHRTAINDGLLNRRDSDSLSILKKSKDGGRLNLCLDLNLMPLEDDDLKLNLRTPVLNCFI* 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00404 172 ProSitePatterns Zinc finger C2H2 type domain signature. 94 114 IPR013087 -
Lapu5g00404 172 ProSitePatterns Zinc finger C2H2 type domain signature. 44 64 IPR013087 -
Lapu5g00404 172 Gene3D Classic Zinc Finger 39 114 - -
Lapu5g00404 172 Pfam C2H2-type zinc finger 42 67 - -
Lapu5g00404 172 Pfam C2H2-type zinc finger 92 116 - -
Lapu5g00404 172 SUPERFAMILY beta-beta-alpha zinc fingers 42 114 IPR036236 -
Lapu5g00404 172 PANTHER ZINC FINGER PROTEIN ZAT5 9 157 - -
Lapu5g00404 172 SMART c2h2final6 42 64 IPR013087 -
Lapu5g00404 172 SMART c2h2final6 92 114 IPR013087 -
Lapu5g00404 172 ProSiteProfiles Zinc finger C2H2 type domain profile. 42 69 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00404 Lapu-Chr5 3315568 3316334 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00404 1 163 C2H2 Transcription Factor Family AT2G28710 47.590 2.48e-38 127
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00404 zf-C2H2_6 3.5e-08 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00404 - - vra:106758971 274.248