Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00402 ATGGGGGGAAAACTCTTTGTCTCGAGATTATCTTTTTATACTACAAAGGACCAGCTTGAGAAGTTGTTCACTCCATTTGGACTAGTTACCAGTGTTAGTCTCGTGGTCGATCCTAGAACTAAAAGGCCCAAAGGGTTTGCGTTTGTCTCCTACAAGTCTCAAATTGAAGCGGAAAAGGCTATGAAAGCCATGAATGGCAGGATTGTTAATGGAAGGCTGCTTTTTGTTGAACCTGCGAACGAGAAATGA 249 0.4257 MGGKLFVSRLSFYTTKDQLEKLFTPFGLVTSVSLVVDPRTKRPKGFAFVSYKSQIEAEKAMKAMNGRIVNGRLLFVEPANEK* 83
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00402 82 Gene3D - 1 82 IPR012677 -
Lapu5g00402 82 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 81 IPR000504 GO:0003723
Lapu5g00402 82 SMART rrm1_1 4 77 IPR000504 GO:0003723
Lapu5g00402 82 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 3 80 - -
Lapu5g00402 82 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 5 73 IPR000504 GO:0003723
Lapu5g00402 82 SUPERFAMILY RNA-binding domain, RBD 4 81 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00402 Lapu-Chr5 3298645 3301187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00402 2 82 Eukaryotic Initiation Factors Gene Family AT2G23350 35.802 9.13e-11 54.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00402 - K13195 pvu:PHAVU_005G141700g 146.362
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00402 5 3298645 3301187 Lapu5g00402 5 3298645 3301187 ECH