Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00394 ATGTCTGCTGCTCTGGATATGACGCTCGACGATATTATCAAGAACAACAAAAAGTCCGCCTCCGCCAACACCAGGGGCCGAGGCCGAGCTTCGGGACCCGGACCTGCTCGCCGTCTCCCCAACCGTGCCGCAAATCGCGCCGCGCCTTACGCCGCCGCTAAGGCGCCGGAGTCTGCGTGGCAGCACGATATGTACGCCGATCAGCCCGTCGCCACGGCTTTCGCAGGTCAAGGTGGTCGGGCGTCTTCCATCGAAACAGGGACGAAGCTTTATATATCTAATCTGGATTATGGCGTTTCCAATGATGATATTAAGAGGCCTCGTGCCCTGACTGATCTGCATACATGTCGTGCTACCACGCCATCTCCAGGCATGCCAGGTCCCTGTTTCAATGGAGACGTCGTGGCAGCACTACATGAGTTGTTTCTTGAAGTTGGTGACCTGAAACGTCATACTGTTCACTATGACAGGAGTGGAAGATCGAAGGGTACAGCAGAAGTAGTCTTCTCGCGACGAGCTGATGCTGTAGCTGCAGTGAAGAGGTACCACAATGTTCAGCTTGATGGAAAACCAATGAAGGTAGAGATCGTGGGAACAAATATTGCGACACATGCTGCAGTGCCTACTGTTAATGGAACTTTTGGAAATCCTAGTGGTCCTCCCAGAAGCAGTGGACAAGGGAGAAGTGGGCCCCTAGGAAGACCGCGTGGCGCGGCTAGAGGGCGAGGTGGCAATCGAAGGGGTCGGGGACGCGGTAGAGGTCGTGATGAGAAGGTATCTGCTGAAGATCTCGATGCTGAGTTGGAGAAGTATCATGCTGAGGCGATGCAATTGAACTGA 840 0.5417 MSAALDMTLDDIIKNNKKSASANTRGRGRASGPGPARRLPNRAANRAAPYAAAKAPESAWQHDMYADQPVATAFAGQGGRASSIETGTKLYISNLDYGVSNDDIKRPRALTDLHTCRATTPSPGMPGPCFNGDVVAALHELFLEVGDLKRHTVHYDRSGRSKGTAEVVFSRRADAVAAVKRYHNVQLDGKPMKVEIVGTNIATHAAVPTVNGTFGNPSGPPRSSGQGRSGPLGRPRGAARGRGGNRRGRGRGRGRDEKVSAEDLDAELEKYHAEAMQLN* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00394 279 SUPERFAMILY RNA-binding domain, RBD 133 242 IPR035979 GO:0003676
Lapu5g00394 279 Pfam C-terminal duplication domain of Friend of PRMT1 221 273 IPR025715 -
Lapu5g00394 279 MobiDBLite consensus disorder prediction 208 265 - -
Lapu5g00394 279 Gene3D - 75 262 IPR012677 -
Lapu5g00394 279 SMART FoP_duplication_2 210 279 IPR025715 -
Lapu5g00394 279 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 137 192 IPR000504 GO:0003723
Lapu5g00394 279 MobiDBLite consensus disorder prediction 250 265 - -
Lapu5g00394 279 Coils Coil 261 279 - -
Lapu5g00394 279 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 88 199 IPR000504 GO:0003723
Lapu5g00394 279 MobiDBLite consensus disorder prediction 16 50 - -
Lapu5g00394 279 PANTHER RNA AND EXPORT FACTOR BINDING PROTEIN 5 277 - -
Lapu5g00394 279 CDD RRM_THOC4 88 196 - -
Lapu5g00394 279 SMART rrm1_1 89 195 IPR000504 GO:0003723
Lapu5g00394 279 MobiDBLite consensus disorder prediction 208 225 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00394 Lapu-Chr5 3258806 3263670 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00394 K12881 - gmx:100783362 293.123
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00394 5 3258806 3263670 Lapu11g00557 11 8904802 8909106 PCT