Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00384 ATGGTTTTCTCTTCTATTCCAGTCTATTTAGATCCTCCCAATTGGCAGCAACAACAAAATCAACATCAAGCAAATGGCAGTAACAGTCCTCAGCTGCTTCCTCCGCTGCCTCAACAACCACAGGACCCTCACGTGGGAGCTCATGAAGCTGCAGGCTCAATCAGGCCCGGTTTGATGGCGGATCGGTCCAAGATACCGGCTCAGGAAGGAGCTCTGAAGTGTCCTCGGTGTGAATCCACCAACACAAAGTTTTGCTACTTCAACAATTACAGCCTCTCTCAGCCGCGGCACTTTTGCAAGACTTGTAGGCGTTATTGGACAAGAGGTGGTGCTCTCAGGAACGTTCCTGTTGGTGGAGGATGCCGTAGGAACAAGAAGAACAAAAGGAGTCGCTCCAAATCTCCGGTTTCTACTGAGAAATCATCACTTCCCAATTCCACAACTGCGATGCCTGAGCTTATTGGACGATTCCCACAACCTTTCATGGCCTCTCTTCAGAGTATGAACCGCTATGGTGTAGGGAACACAGGTGTTAACTTGCGTGAGATACAAGCACAGAACGGTTCTCATATGGGGTTTCAAATTGGTGGTCAGGGTCATGGTTCAAGTGTTACTACTGCAGGAGGAGTCGAACAGTGGCGGTTTCAGCAATTTCCTTTCTTGAATGGTTTTGAGTCGGTTTCTGCTGTTTCTTCCAATCCTTTTCAAACGGAAAGTGTTGAAGGTTTGGTTGGAGATATTGTTGCAACAACTTCTAGGGTTACTCAGATGTCACCACGAGTTAAATTGGAATATAATGGTGGTTTAAATTTGTCGAGATCTCCTTTGAATGTATCAGAAAATAGTAACCATTATTATTCATGGATGGATTTATCTGGTCTTGCATCTTCTTCCGCTAGTCATCTCTTGTAA 912 0.455 MVFSSIPVYLDPPNWQQQQNQHQANGSNSPQLLPPLPQQPQDPHVGAHEAAGSIRPGLMADRSKIPAQEGALKCPRCESTNTKFCYFNNYSLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKKNKRSRSKSPVSTEKSSLPNSTTAMPELIGRFPQPFMASLQSMNRYGVGNTGVNLREIQAQNGSHMGFQIGGQGHGSSVTTAGGVEQWRFQQFPFLNGFESVSAVSSNPFQTESVEGLVGDIVATTSRVTQMSPRVKLEYNGGLNLSRSPLNVSENSNHYYSWMDLSGLASSSASHLL* 304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00384 303 MobiDBLite consensus disorder prediction 116 151 - -
Lapu5g00384 303 Pfam Dof domain, zinc finger 71 126 IPR003851 GO:0003677|GO:0006355
Lapu5g00384 303 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 40 206 IPR045174 GO:0003700|GO:0006355
Lapu5g00384 303 MobiDBLite consensus disorder prediction 16 50 - -
Lapu5g00384 303 ProSitePatterns Zinc finger Dof-type signature. 74 110 IPR003851 GO:0003677|GO:0006355
Lapu5g00384 303 ProSiteProfiles Zinc finger Dof-type profile. 72 126 IPR003851 GO:0003677|GO:0006355
Lapu5g00384 303 MobiDBLite consensus disorder prediction 16 32 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00384 Lapu-Chr5 3186973 3188682 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00384 8 288 C2C2-Dof Transcription Factor Family AT3G55370 37.500 5.35e-44 152
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Lapu5g00384 zf-Dof 2.5e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00384 - - gmx:100775899 452.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00384 5 3186973 3188682 Lapu11g00569 11 9002360 9006453 PCT