Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00380 ATGGCCGATGCTGAGGATATTCAGCCACTCGTCTGCGATAATGGGACAGGAATGGTTAAGGCTGGATTTGCTGGTGATGATGCTCCAAGGGCTGTGTTTCCCAGCATTGTTGGTCGGCCACGTCACACTGGTGTGATGGTTGGGATGGGGCAAAAGGATGCATATGTTGGGGATGAGGCTCAGTCCAAGCGTGGTATATTAACTCTGAAATATCCCATTGAGCATGGTATTGTGAGCAACTGGGATGACATGGAGAAGATCTGGCATCACACCTTCTACAATGAACTCCGTGTGGCCCCAGAGGAGCACCCTGTTCTGCTCACTGAAGCCCCTCTCAATCCAAAGGCTAATCGTGAGAAAATGACCCAAATCATGTTTGAGACCTTCAACACACCTGCCATGTATGTTGCCATCCAGGCTGTTCTGTCCCTCTATGCCAGCGGCCGTACAACTGGTATTGTTCTTGACTCTGGAGATGGTGTCAGCCACACTGTACCTATTTATGAAGGGTATGCCCTCCCTCATGCCATCCTCCGTCTTGACTTAGCAGGGCGTGACCTCACTGATGCCCTGATGAAAATCCTTACTGAGCGTGGTTACTCCTTCACTACCACCGCTGAGAGAGAAATTGTAAGGGATATGAAGGAAAAATTGGCTTATATTGCCCTTGATTATGAACAAGAGCTTGAAACTTCAAAAACTAGTTCAGCTGTTGAGAAGAGCTATGAGCTGCCTGATGGACAGGTCATCACCATTGGTGCGGAGCGTTTCCGTTGTCCTGAAGTCCTCTTCCAGCCATCCATGATTGGAATGGAAGCCGTTGGCATTCATGAGACCACATACAATTCAATTATGAAGTGCGATGTTGATATCAGGAAGGACTTGTATGGAAACATAGTCCTCAGTGGTGGTTCTACCATGTTCCCCGGTATTGCTGACAGAATGAGCAAGGAAATCACTGCCCTGGCCCCAAGCAGCATGAAGATCAAGGTTGTTGCTCCACCCGAGAGAAAGTACAGTGTCTGGATTGGTGGCTCTATCTTGGCTTCACTCAGCACTTTCCAACAGCTTGGTCGCTTGAATTTTGTCTCCTTCTCACAGCAGTTGAAGTTCATAGGCCAATTGGGATTTGTGTAA 1137 0.482 MADAEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDALMKILTERGYSFTTTAEREIVRDMKEKLAYIALDYEQELETSKTSSAVEKSYELPDGQVITIGAERFRCPEVLFQPSMIGMEAVGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFPGIADRMSKEITALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQLGRLNFVSFSQQLKFIGQLGFV* 379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00380 378 Pfam Actin 5 357 IPR004000 -
Lapu5g00380 378 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Lapu5g00380 378 FunFam Actin, alpha skeletal muscle 3 178 - -
Lapu5g00380 378 FunFam Actin, muscle 182 273 - -
Lapu5g00380 378 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Lapu5g00380 378 SUPERFAMILY Actin-like ATPase domain 149 357 IPR043129 -
Lapu5g00380 378 Gene3D - 10 357 - -
Lapu5g00380 378 PRINTS Actin signature 63 85 IPR004000 -
Lapu5g00380 378 PRINTS Actin signature 142 161 IPR004000 -
Lapu5g00380 378 PRINTS Actin signature 117 130 IPR004000 -
Lapu5g00380 378 PRINTS Actin signature 28 37 IPR004000 -
Lapu5g00380 378 PRINTS Actin signature 51 62 IPR004000 -
Lapu5g00380 378 PRINTS Actin signature 238 254 IPR004000 -
Lapu5g00380 378 SMART actin_3 7 368 IPR004000 -
Lapu5g00380 378 Gene3D Actin; Chain A, domain 4 182 273 - -
Lapu5g00380 378 SUPERFAMILY Actin-like ATPase domain 6 155 IPR043129 -
Lapu5g00380 378 FunFam Major actin 260 340 - -
Lapu5g00380 378 Gene3D - 140 340 - -
Lapu5g00380 378 PANTHER ACTIN 9 354 IPR004000 -
Lapu5g00380 378 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00380 Lapu-Chr5 3148848 3151911 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00380 1 357 Cytoskeleton Gene Families AT5G09810 96.359 0.0 720
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00380 K10355 - rvl:131300092 711.449
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00380 5 3148848 3151911 Lapu11g00572 11 9042828 9046350 PCT