Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00379 ATGGAACTTTTGAAGCCTCTGCACCCTCGTCATGCACCCATTTTGTGTCATCCCTTCCACGGCCACCCCTCTTCTTCTCAATCTCAATTTCAATCTCAGCTTCTCCTCTCCATGCCTCCCAAGGTTCATGTAGCTGTTGGCAAATCTATTGATAAAGCTGTTGCCTTGCTTCAATGGACCTTAAACCACTTTCAGAACGCTGAAATCCTTATAGTACATGTTTATCAACCTTCTCTCACGATCCCCACTCTGTTGGGGAAATTGCCTGCATCACAGGCTAGTCCTGCTGTGGAGGCTGCTTTTCGAAATGTGGAGAGAAAACAGACCATGGACCTTTTAGACAAGTACTTGAGCGTTTGCCACACAGCCAGGATTAAGGCAAGCATTATTATAACTGAAGCTGATCAAGTCCAAAAAGGAATTGTTGATTTGGTCGTTAAGCATAATGTTCAGAAGCTTGTCATTGGAGCAGCGCCAGAAAATTGCATGAAAGTGAAAAGGAATTCTGGTAAAGCAAGTTATACTGCCAAAAATGCTCCTCCATTCTGTGAAGTATGGTTTATCTATAAAGGCAAAGTCATTTGGACAAGAGAGGCTTCTGAAACACCATGTTCTTCATCCTCTTGTGCTCAACCTGAGATTGCCACCGCAGAAAGCTTGAGATCTAGATCTTTTCAGTATGGTAAGAATGAATTGTTTGACTCGGAATGTCTTCAACCAAATTCGGCAAGATCTGCTACTGGTTCTGGAAATAGAAGCTGGGTTCATGGAGAAATCATCGAAACTGAAGGCACTTGTTCATCCAAAGCATCCAGTTGTAGCAGTCATTGTTCCACCCAAAATTCTTCTCGGGCTTATTTAAATACATACCTAGAGGCCATGGAAGAAAAAATTAACAAACAACTTACTGAAACCAAGAGAGAAGCTGAGGCAGTAGCAGATGAAGCCTTTGCAGAGCTATTAAAGTGTGGGAGGTTAGAAGTTGAAGCCATGGAGGCTATCAGAAAGGTCGATTTGTTTGAATCTGCCCATGTGCGTGAAGTAAAGCTCAGAAAAGAGGTCGAGGATGCACTTAGAGATATGGTACAAGAACAACAAAAGCTCTTGAATGAGAGTGAAGAAATTGCTAGCGAGCTACAAATGACCATGAGAAATATTGCACTGTTAGATAGTCGTGCCCAGGAAGCAAACCGTAGGCGCAACGAAGCTACAGATGAACTATCACTAATTCAAGAATCCATCTCAACCCTTTGGCAAGAAAGGCAGCAGATAAGGAGACAGAAAATGGAAGCCCTACGTTGGCTTGAGCGGTGGAGAAGTCGTGGACAAGTTGGAGCAGCTCATTGCAATGGGGTCATTGGGTTTCCTGAAGAATTACCTGAGTTAGCAGAGTTTTCATTATCAGATCTTCAAAATGCCACATGTAATTTTTCCAATAGCTTTAAAATTGTGCAAGGTGGATTTGGTTGTATATACAAGGGGGAAATGTTAGGTAGGACTGTTACGATAAAAAAGTTCCATCAACATAACATGCAAGGACCAGTGGAGTTTCGTCAAGAGATTCAAGTGCTTGGTAGTCTCCAGCACCCTCATTTAATCACTTTGCTTGGTGTTTGCCCTGAAGCCGGGTCAATTGTATACGAGTACCTCCCCAATGGAACTCTTCAAGACTACCTATTCCGGAAAAGCAACAATTCTCCTTTGACATGGAATACCCGAGCACGAATGATTGCTGAAATCGCTAGTGCACTCTGCTTCCTACATTCTTTTAAACCCCAAACTATTATCCATGGTGATCTGAAGCCAGAAACTGTACTACTTGATTCTTCACTTGGTTGCAAGATATGTGGATTTGGGTTCTGCAGTCTGGTAAGTGAGGAGTCTCTCCTCCGTCCTAGTTTCCGTTTGAGCACTGAACCAAAGGGTGCTTTCACATATACGGATCCAGAGTTTCATAGAACTGGAATACTAACAACAAAGTCTGACATCTACTCCTTCGGGCTCATCATTTTACAACTCCTCACTGGTAGTACTCCAGTTGGATTAGCAGTTCTAGTACGCAATGCAGCCTCATGTGGAAAATTGTCTTCAATTCTGGATTCTTCAGCTGGAGAATGGCCCTCGCCTGTGGCATCGCGATTGGTTGAACTGGGATTGCAATTCTGTCAACAAAATCGTAGAGACAGACCAGATTTAACACCTACACTAGTGAGAGAATTGGAGCAGATGCATGCTTCAGAAGAGCGACCAGTGCCATCTTTTTTCTTATGTCCAATCCTTCAGGAAATAATGCATGATCCTCAAGTTGCGGCAGACGGATTTACCTACGAAGGAGATGCAATACGTGAATGGTTGGAAAATGGGCACGACACTTCTCCCATGACTAATTTGAAATTGAATCACCTCTTTCTTACTCCCAACCACGCACTTCGACTGGCCATCCAAGACTGGCTCTGCAAATCTTGA 2466 0.4331 MELLKPLHPRHAPILCHPFHGHPSSSQSQFQSQLLLSMPPKVHVAVGKSIDKAVALLQWTLNHFQNAEILIVHVYQPSLTIPTLLGKLPASQASPAVEAAFRNVERKQTMDLLDKYLSVCHTARIKASIIITEADQVQKGIVDLVVKHNVQKLVIGAAPENCMKVKRNSGKASYTAKNAPPFCEVWFIYKGKVIWTREASETPCSSSSCAQPEIATAESLRSRSFQYGKNELFDSECLQPNSARSATGSGNRSWVHGEIIETEGTCSSKASSCSSHCSTQNSSRAYLNTYLEAMEEKINKQLTETKREAEAVADEAFAELLKCGRLEVEAMEAIRKVDLFESAHVREVKLRKEVEDALRDMVQEQQKLLNESEEIASELQMTMRNIALLDSRAQEANRRRNEATDELSLIQESISTLWQERQQIRRQKMEALRWLERWRSRGQVGAAHCNGVIGFPEELPELAEFSLSDLQNATCNFSNSFKIVQGGFGCIYKGEMLGRTVTIKKFHQHNMQGPVEFRQEIQVLGSLQHPHLITLLGVCPEAGSIVYEYLPNGTLQDYLFRKSNNSPLTWNTRARMIAEIASALCFLHSFKPQTIIHGDLKPETVLLDSSLGCKICGFGFCSLVSEESLLRPSFRLSTEPKGAFTYTDPEFHRTGILTTKSDIYSFGLIILQLLTGSTPVGLAVLVRNAASCGKLSSILDSSAGEWPSPVASRLVELGLQFCQQNRRDRPDLTPTLVRELEQMHASEERPVPSFFLCPILQEIMHDPQVAADGFTYEGDAIREWLENGHDTSPMTNLKLNHLFLTPNHALRLAIQDWLCKS* 822
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00379 821 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 38 158 - -
Lapu5g00379 821 Gene3D HUPs 35 158 IPR014729 -
Lapu5g00379 821 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 752 821 IPR013083 -
Lapu5g00379 821 Pfam Protein tyrosine and serine/threonine kinase 482 733 IPR001245 GO:0004672|GO:0006468
Lapu5g00379 821 PANTHER OS02G0152300 PROTEIN 42 815 - -
Lapu5g00379 821 SUPERFAMILY Protein kinase-like (PK-like) 460 739 IPR011009 -
Lapu5g00379 821 ProSiteProfiles Protein kinase domain profile. 477 747 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00379 821 Coils Coil 295 319 - -
Lapu5g00379 821 Coils Coil 347 413 - -
Lapu5g00379 821 CDD RING-Ubox_WDSUB1-like 752 807 - -
Lapu5g00379 821 SUPERFAMILY RING/U-box 741 820 - -
Lapu5g00379 821 ProSiteProfiles U-box domain profile. 750 821 IPR003613 GO:0004842|GO:0016567
Lapu5g00379 821 Pfam U-box domain 751 820 IPR003613 GO:0004842|GO:0016567
Lapu5g00379 821 CDD STK_N 41 191 - -
Lapu5g00379 821 Gene3D Phosphorylase Kinase; domain 1 455 549 - -
Lapu5g00379 821 SMART Ubox_2 754 817 IPR003613 GO:0004842|GO:0016567
Lapu5g00379 821 Gene3D Transferase(Phosphotransferase) domain 1 550 751 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00379 Lapu-Chr5 3141736 3145999 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00379 41 818 U-box Gene Family AT2G45910 36.125 5.31e-168 506
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu5g00379 PK_Tyr_Ser-Thr 1.5e-33 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00379 - - gmx:100788846 1421.76