Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00356 ATGAGCTCCGACACCACCTCCTATTGGTGTTACAGCTGCACACGCTACGTTCACATCCTCGAGCACCACGACGTCGTTTGCCCCCGCTGCCAGGGTGGTTTCGTCGAGAAGGTCCAGGCCGGCCACTCTCCGGCGCTCTCCCTCATAGCAGACGGCGCGTCTAGAAGCTCCATGTTCCGTCGGCGACGCCGCAACGCCGGTAGCCACTCGCCGTTCAACCCGGTGATCGTGCTCCGGGGGCCGGGGGAGGATGACGAGAGCAGCTTTGAGTTATACTACGACGGCGACGACGGCGCGGGTCTCCGGCCGCTTCCGTCGACGATGTCCGAGTTTTTGCTCGGATCGGGCTTCGATCGGTTGCTGGAGCAGGTTTCGCAGATCGAGATCAACGGCTTCGGGAGGGCGGAGAATCCTCCGGCTTCTAAGGCGGCGATAGAGTCAATGCCGACGGTGCAAATCACTGAGTCTCAGGTCGTGACAGAGACGCACTGCGCCGTGTGCAAAGAGCCCTTCGAGCTAGGCGCGTTGGCGCGTGAGATGCCGTGCAAACACCTCTACCACTCCGATTGCATTCTCCCGTGGCTCTCGATGCGAAACTCGTGCCCGGTGTGCCGTCACGAGTTGCCGCCGGAGCAAGTGCAATCGGAGAGCAGAGTTGCTGGCCAGATCGAGGAGGAAGCCGTAGGGTTGACCATATGGAGGCTGCCGGGCGGTGGATTCGCCGTCGGGAGGTTTGCCGGTGAGAGCCACTTGCCGGTGGTGTACACGGAGATGGAGAGTGGTGGGAATTCGAGCGAAGGTTCGAGGAGAATCTCTCTGTCCGTTGGAAGCGGGAGAGTTAGGGAAAGCCGTGGTGGATTTGGCAGGATATTCCGCAATTGGTTTGGGAGAATTGGGGCTTTGACTAGAAGCCGTAGCCTTTCAACTTCGCTCTTCAGTAGAAGAAGAAGTAGCACGAGAACCTGGGTTTTGGATAGTAATTGA 984 0.5945 MSSDTTSYWCYSCTRYVHILEHHDVVCPRCQGGFVEKVQAGHSPALSLIADGASRSSMFRRRRRNAGSHSPFNPVIVLRGPGEDDESSFELYYDGDDGAGLRPLPSTMSEFLLGSGFDRLLEQVSQIEINGFGRAENPPASKAAIESMPTVQITESQVVTETHCAVCKEPFELGALAREMPCKHLYHSDCILPWLSMRNSCPVCRHELPPEQVQSESRVAGQIEEEAVGLTIWRLPGGGFAVGRFAGESHLPVVYTEMESGGNSSEGSRRISLSVGSGRVRESRGGFGRIFRNWFGRIGALTRSRSLSTSLFSRRRSSTRTWVLDSN* 328
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00356 327 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 130 211 IPR013083 -
Lapu5g00356 327 ProSiteProfiles Zinc finger RING-type profile. 164 205 IPR001841 -
Lapu5g00356 327 CDD RING-H2_RNF126-like 164 205 - -
Lapu5g00356 327 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 70 209 - -
Lapu5g00356 327 Pfam Protein of unknown function (DUF1117) 228 318 IPR010543 -
Lapu5g00356 327 SUPERFAMILY RING/U-box 144 210 - -
Lapu5g00356 327 FunFam E3 ubiquitin-protein ligase RING1-like 126 211 - -
Lapu5g00356 327 Pfam zinc-ribbon 6 37 IPR039525 GO:0061630
Lapu5g00356 327 Pfam Ring finger domain 163 205 IPR001841 -
Lapu5g00356 327 SMART ring_2 164 204 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00356 Lapu-Chr5 2949535 2950932 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00356 93 216 C3H Transcription Factor Family AT5G01980 40.323 5.81e-26 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00356 K11982 - gmx:100784822 512.301
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00356 5 2949535 2950932 Lapu11g00593 11 9203406 9204576 PCT