Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00344 ATGAGGAAGCCAGAACTGTGTAGTGGTAAAAGCAACAAGTTTAGAAAGGGATTGTGGTCACCAGAAGAAGATGAGAAACTGATGAACTACATGCTAAACAATGGACAAGGGTGTTGGAGCGATGTGGCAAGAAATGCTGGCCTCCAAAGGTGTGGCAAAAGTTGTAGGCTACGATGGATCAATTACTTGAGGCCTGATCTCAAGAGAGGTGCATTCTCACCCCAAGAAGAGGAACTCATCATCCACTTCCATTCCTTTCTTGGAAACAGATGGTCTCAAATAGCGGCCCGTTTGCCTGGGAGAACGGACAATGAGATAAAAAACTTTTGGAATTCAACGATAAAGAAAAGACTCAAGAACATGTCGTCCACGACCACAGCTTCAACCTCACCAAATGCTAGTGAGACCTCATCTGAACCAAGTAATAAAGACCTCAACATGGGAGGGTTTATGCCTACACAACATCATCAGCATGCAAGCTTTGTGCCTGTGTTTGGTTCATCTCCATCACAATCAATGCAAACCACAGTTCTCAATACAATGATTGAAAGATTCCCTATGTTGGATCATGGACTAAACATGCCACAAGTTGGAGGATACTTCGAAGGCACAGGGACATGCTTTTCTCAAAGTAAAGTTGACAACAGAGGTTCTTATTTAGAAAACGGAGTGTTTGGAAGTGTAAATATTGGGGTGGAGGGGGATATGTTTGTTCCTCCCCATGAGAATCTAAACACCAGTATCAATCATAACCTGAGTAGCACGTGCAAGAGAGAAACTAACAGCAGTTACTTTGATGACATAAATAGTATACTTAACAACTGCAACATTGGCATAAGTAGTGAAAATAAGGAAGGGGTGGAGAATTTGTTTCAGCAAGAGTTAGCAGCGGCAGAATGGGACTTTGAGGAGTTGATGAAAGATGTTTCCTCCTTTCCGTTTGTTGATTTTTCCTTCTGA 960 0.4229 MRKPELCSGKSNKFRKGLWSPEEDEKLMNYMLNNGQGCWSDVARNAGLQRCGKSCRLRWINYLRPDLKRGAFSPQEEELIIHFHSFLGNRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSSTTTASTSPNASETSSEPSNKDLNMGGFMPTQHHQHASFVPVFGSSPSQSMQTTVLNTMIERFPMLDHGLNMPQVGGYFEGTGTCFSQSKVDNRGSYLENGVFGSVNIGVEGDMFVPPHENLNTSINHNLSSTCKRETNSSYFDDINSILNNCNIGISSENKEGVENLFQQELAAAEWDFEELMKDVSSFPFVDFSF* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00344 319 SUPERFAMILY Homeodomain-like 14 110 IPR009057 -
Lapu5g00344 319 SMART sant 68 116 IPR001005 -
Lapu5g00344 319 SMART sant 15 65 IPR001005 -
Lapu5g00344 319 FunFam MYB transcription factor 13 69 - -
Lapu5g00344 319 Gene3D - 16 68 - -
Lapu5g00344 319 Pfam Myb-like DNA-binding domain 69 112 IPR001005 -
Lapu5g00344 319 Pfam Myb-like DNA-binding domain 16 63 IPR001005 -
Lapu5g00344 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 64 118 IPR017930 -
Lapu5g00344 319 CDD SANT 71 111 IPR001005 -
Lapu5g00344 319 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 63 IPR017930 -
Lapu5g00344 319 ProSiteProfiles Myb-like domain profile. 11 63 IPR001005 -
Lapu5g00344 319 ProSiteProfiles Myb-like domain profile. 64 114 IPR001005 -
Lapu5g00344 319 MobiDBLite consensus disorder prediction 120 147 - -
Lapu5g00344 319 PANTHER MYB DOMAIN PROTEIN 55 7 265 - -
Lapu5g00344 319 Gene3D - 70 145 - -
Lapu5g00344 319 CDD SANT 19 63 IPR001005 -
Lapu5g00344 319 FunFam Transcription factor MYB46 70 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00344 Lapu-Chr5 2865881 2868187 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00344 1 317 MYB Transcription Factor Family AT3G08500 44.286 4.20e-77 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Lapu5g00344 Myb_DNA-binding 1.8e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00344 K09422 - gmx:100799410 447.203