Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00342 ATGGCAGCAACTCCTTCCAAATCCAGATTGCGATCCCAATCCAATGCTAAATCCTCGCCCACGATAACCCCACGCACTCCACAAACCCTACATCTGCGCAGATCCGCACGCGCCAAGTCCCTCCTATTCGATTCTCCCAAATCTCCCAACTCACCTTCTGAAATCTCCCTCACAACTCCGAAGCGGAGGACTCGACGAGTCATCGATTATGTCGCTCATGATTCTGACGAAGTCAAAGTGGTCACTAAAGATTCAGCTAAGAAGAGTGGTGCATCCAAGGAAAAGAATAGGAAGAGCTCAATTGAAGCTTCCCTCGCTCCGGTGACGCCGGTTTCCTTGGAGAAGACCTCGAAGAGGAAGAGGGAGGATGAGAGGAGTGTGGTTACCAGAGCTAAAAGGGGAAAATTGGAGAATGAAAAACAGAGTTTAAAGTTGCCTGCGAGGCGCGTGTATTATAAAAAAGTGATATTTGATGGAGGAGAGTTTCAAGTGGAAGATGACGTTTACGTCAAGAGGAGAGAAGATGCTGCCTCCGACAATGAAGATCCGGAATTTGAGGTGTGCAGGATGTGTTTTTCGACAAACGATGAGGTCATGATTGAGTGTGACGATTGTTTGAATGGGTTTCATTTGAAATGCTTGAGACCTCCATTGAAAGACGTTCCTGAGGGGGATTGGATATGTGGGTTCTGTGAGGCTCGGAGGATTGGGAAGGAGGTTCATCTTCCAAAGCCTCCGGTGGGTAAGAAAGTGGTTAGAACTATGAGGGAGAAGCTTCTTTCCAGTGATTTGTGGGCTGCTCATATTGAAAGCCTATGGAAAGAGGTGGATGGCAACTATTGGTGTCGGGTACGGTGGTATACAATCCCGGAAGAGACTTCCGTTGGGAGGCAGCCACATAACCTGAGAAGGGAGCTATACCGAACTAATGAATTTGCTGACATTGAGATGGAATCTATCCTTAGACATTGCTATGTCATGACTCCCAAAGAATATGCTAACGCTAGCAATGGGGGAGATGATGTTTTCTTATGTGAATATGAGTATGACATCAATTGGCATAGTTTCAAACGTCTTGCTGATATTGACAATGAAAGAGAGAATGGTGAAGAGACTGACAATGACGAAGACTGGAACCTTGACAAAGAATCAGACTCTGATACAGATGAAGATGTTGGATATGAAGAAGAAAATATTAAAGATGGACAATCTCAGCCATCAAAAGGCCAAAACTTAGCTGCAAATCTGCACAAGGGACGGTTCTTTGGACTTCAGAAGATAGGGACAAAAAGAATTCCACAGCATGTAAGGTCTCACAAACAGACTGCTCTTGAGAGAGCAAAGTCTACACTGCTGTTAGCGTCGCTGCCTAAATCTTTACCATGCAGAAATAAAGAAATGGAGGAGATAAGTACATTTATCAAAGGTGCTATTTCTGACGATCAATGTCTGGGGGGCTGCCTCTACATTCATGGTGTTCCAGGAACTGGCAAGACAATGAGTGTACTATCAGTAATGAGGACTTTGAAGTCAGAAGTTGATGCAGGAAACATCAAACCATACACTTTTGTGGAGATTAATGGTTTGAAGTTGGCATCACCAGAGAATATTTATCGGGTCATATACGAGGCACTGAATGGACATAGGGTCAGCTGGAAAAAGGCTCTCCACTTGCTGAATGAGAGATTTGTAGAAGGAAAGAAAATCAGAGATGAGGCTGACCGACCATGTATTTTGCTCATTGATGAACTCGATCTTCTAGTGACCAGAAACCAATCGGTTCTGTATAATATTCTTGACTGGCCTACTAAGCCACATTCCAAACTAATAGTCATAGGGATAGCAAATACTATGGATCTTCCAGAGAAGTTACTTCCTCGTATTTCAAGCAGAATGGGAATTCAGAGGCTTTGCTTTGGCCCATATAATTATCATCAGCTTCAAGAAATCATTTCAAGTCGCCTCAAGGGAATTGATGTATTTGAAAAGCAAGCCGTAGAATTTGCTTCAAGAAAGGTTGCAGCAATCTCAGGAGATGCACGTCGTGCTTTGGAGATATGCAGACGTGCAGCTGAAATTGCAGATTATCGAATGAAGATAATTCCTAATCCTGATCTTGTTACTGCAGGAAAGGGACTTGTTGGAATGGCAGATGTTGAAGCAGCCATTCAAGAGATGTTCCAAGCACCTCACATTCAAATGATGAAAAGCTGTTCCAGATTAAGCAAAATTTTCCTGACAGCTATGGTACACGAGCTTTATAATACAGGAATGGGGGAAACCACTTTTGAAAAGTTGGCTATGAGGGTTTCATGCCTATGTATCAGCAACGGAGAAGTTTTTCCTGGATATGATACTCTGCTGCAAGTTGGCTGTAGGCTAGGTGAATGCAGGATTATTTTATGTGAAGCAGGTGCGAAACACAAGCTGCAAAAATTGCAGCTTAATTTCCCGAGTGATGATGTGGCCTTTGCGCTGAGAGACAGCAAAGATCTACCTTGGCTGTCAAAGTATCTAATGTAG 2523 0.4356 MAATPSKSRLRSQSNAKSSPTITPRTPQTLHLRRSARAKSLLFDSPKSPNSPSEISLTTPKRRTRRVIDYVAHDSDEVKVVTKDSAKKSGASKEKNRKSSIEASLAPVTPVSLEKTSKRKREDERSVVTRAKRGKLENEKQSLKLPARRVYYKKVIFDGGEFQVEDDVYVKRREDAASDNEDPEFEVCRMCFSTNDEVMIECDDCLNGFHLKCLRPPLKDVPEGDWICGFCEARRIGKEVHLPKPPVGKKVVRTMREKLLSSDLWAAHIESLWKEVDGNYWCRVRWYTIPEETSVGRQPHNLRRELYRTNEFADIEMESILRHCYVMTPKEYANASNGGDDVFLCEYEYDINWHSFKRLADIDNERENGEETDNDEDWNLDKESDSDTDEDVGYEEENIKDGQSQPSKGQNLAANLHKGRFFGLQKIGTKRIPQHVRSHKQTALERAKSTLLLASLPKSLPCRNKEMEEISTFIKGAISDDQCLGGCLYIHGVPGTGKTMSVLSVMRTLKSEVDAGNIKPYTFVEINGLKLASPENIYRVIYEALNGHRVSWKKALHLLNERFVEGKKIRDEADRPCILLIDELDLLVTRNQSVLYNILDWPTKPHSKLIVIGIANTMDLPEKLLPRISSRMGIQRLCFGPYNYHQLQEIISSRLKGIDVFEKQAVEFASRKVAAISGDARRALEICRRAAEIADYRMKIIPNPDLVTAGKGLVGMADVEAAIQEMFQAPHIQMMKSCSRLSKIFLTAMVHELYNTGMGETTFEKLAMRVSCLCISNGEVFPGYDTLLQVGCRLGECRIILCEAGAKHKLQKLQLNFPSDDVAFALRDSKDLPWLSKYLM* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00342 840 FunFam Origin recognition complex subunit 1 251 443 - -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 81 100 - -
Lapu5g00342 840 SMART PHD_3 187 232 IPR001965 -
Lapu5g00342 840 PANTHER CELL DIVISION CONTROL PROTEIN 6-RELATED 292 835 - -
Lapu5g00342 840 Pfam AAA lid domain 662 695 IPR041083 -
Lapu5g00342 840 ProSiteProfiles Zinc finger PHD-type profile. 185 234 IPR019787 -
Lapu5g00342 840 SMART AAA_5 484 638 IPR003593 GO:0016887
Lapu5g00342 840 MobiDBLite consensus disorder prediction 81 133 - -
Lapu5g00342 840 FunFam Origin recognition complex subunit 1 441 640 - -
Lapu5g00342 840 ProSiteProfiles BAH domain profile. 243 360 IPR001025 GO:0003682
Lapu5g00342 840 SMART BAH_4 219 360 IPR001025 GO:0003682
Lapu5g00342 840 Pfam BAH domain 268 358 IPR001025 GO:0003682
Lapu5g00342 840 MobiDBLite consensus disorder prediction 114 133 - -
Lapu5g00342 840 FunFam Origin recognition complex subunit 1 183 250 - -
Lapu5g00342 840 ProSitePatterns Zinc finger PHD-type signature. 188 231 IPR019786 -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 1 66 - -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 367 410 - -
Lapu5g00342 840 SUPERFAMILY FYVE/PHD zinc finger 178 238 IPR011011 -
Lapu5g00342 840 Pfam PHD-finger 188 233 IPR019787 -
Lapu5g00342 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 86 241 IPR013083 -
Lapu5g00342 840 Gene3D - 251 385 IPR043151 -
Lapu5g00342 840 Gene3D - 637 726 - -
Lapu5g00342 840 Gene3D - 440 636 IPR027417 -
Lapu5g00342 840 Pfam ATPase family associated with various cellular activities (AAA) 489 634 IPR003959 GO:0005524|GO:0016887
Lapu5g00342 840 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 454 697 IPR027417 -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 44 58 - -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 1 30 - -
Lapu5g00342 840 MobiDBLite consensus disorder prediction 367 396 - -
Lapu5g00342 840 FunFam Origin recognition complex subunit 1 637 728 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00342 4 839 Core DNA Replication Machinery Family AT4G14700 61.222 0.0 1011
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Lapu5g00342 AAA 4e-20 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00342 K02603 - gmx:100798547 1466.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00342 5 2840954 2847199 Lapu5g00342 5 2840954 2847199 ECH