Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00341 ATGGCGGCGGCGGCGGCGCAGGGGTACCACCAACCTTCGACAATCGAGGAAGTAAGAACACTATGGATTGGGGATTTGCAGTACTGGGTGGACGAGGCGTACCTCAGCCACTGCTTCGCCCACACCGGCGAGGTCCTCACCATCAAAATCATCCGAAACAAGATGACGGGCCAACCCGAGGGTTACGGTTTCGTCGAGTTTGTTTCCCACGCAGCAGCAGAGCGCGTGCTCCAGACCTACAATGGCATGCAAATGCCGGGCACCGAACAGACCTTCAGGCTCAATTGGGCCTCCTTCGGCATCGGGGAGCGCAGGCCCGATGCGGGCCCAGAACACTCCATCTTTGTGGGCGATCTTGCGCCCGACGTAACGGACTACCTTCTTCAAGAAACCTTCCGGGCCCACTACCCCTCCGTTCGCGGCGCCAAGGTCGTCACAGATCCGAACACAGGCCGCTCCAAGGGCTACGGCTTCGTCAAATTCTCCGACGAGAACGAACGCAACCGTTCCATGACCGAGATGAACGGCGTGTATTGCTCCACCAGAGCCATGCGCATTAGCGCCGCCACGCCTAAGAAGACCACCGCTACTTACGCTGCGTCCGCGCCTGTCCCCAAACCGGTGTACCAGATTCCGGCATACACTGCGCCGGTTCAAGTTCAACCACCGGAGTATGATGTTAATAACACTACCATTTTTGTTGGTAGTTTGGATCTTAATGTGTCCGAGGAGGAATTGAAGCAAAACTTTCTGCAATTTGGGGAAATTGTCTCTGTCAAAATTCAGCCTGGCAAGGGAGCATCTGCTGAAGAAGCTATTCAGAAGATGCAGGGAAAGATGATAGGCCAACAATTGGTCAGGATTTCTTGGGGTAGGACACTAACAGCTAGACAGGACTTACCTGGTGGATGGGGACACCAGATGGATCCAAGTCAATGGAATGCCTACTATGGGTATGGGCAGGGTTATGAAGCATATGCTTATGGGGCTGCACAAGATCCTTCATTGTATGCATATGGTGCATATAGTGGCTATGCACAATACCCCCAACAGGTTGAAGGTGCTCAAGACCCATCGGGTATGTCTGTGCCTACCATGGAGCAAAGGGAGGAATTGTATGATCCCTTGGCAATGCCTGATGTTGACAAGTTAAATGCTGCATACCTATCAGTACATGGAAATTCCATTTTAGGACGATCGCTATGGCAAAAATCCTGTTCATCATCGTTACACCAAACTTAA 1242 0.525 MAAAAAQGYHQPSTIEEVRTLWIGDLQYWVDEAYLSHCFAHTGEVLTIKIIRNKMTGQPEGYGFVEFVSHAAAERVLQTYNGMQMPGTEQTFRLNWASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAHYPSVRGAKVVTDPNTGRSKGYGFVKFSDENERNRSMTEMNGVYCSTRAMRISAATPKKTTATYAASAPVPKPVYQIPAYTAPVQVQPPEYDVNNTTIFVGSLDLNVSEEELKQNFLQFGEIVSVKIQPGKGASAEEAIQKMQGKMIGQQLVRISWGRTLTARQDLPGGWGHQMDPSQWNAYYGYGQGYEAYAYGAAQDPSLYAYGAYSGYAQYPQQVEGAQDPSGMSVPTMEQREELYDPLAMPDVDKLNAAYLSVHGNSILGRSLWQKSCSSSLHQT* 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00341 413 SUPERFAMILY RNA-binding domain, RBD 208 322 IPR035979 GO:0003676
Lapu5g00341 413 CDD RRM2_SECp43_like 111 190 - -
Lapu5g00341 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 230 293 IPR000504 GO:0003723
Lapu5g00341 413 Gene3D - 216 298 IPR012677 -
Lapu5g00341 413 PANTHER TRNA SELENOCYSTEINE 1-ASSOCIATED PROTEIN 1-RELATED-RELATED 13 297 - -
Lapu5g00341 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 19 99 IPR000504 GO:0003723
Lapu5g00341 413 FunFam Polyadenylate-binding protein RBP47B 100 202 - -
Lapu5g00341 413 FunFam Polyadenylate-binding protein RBP47B 18 98 - -
Lapu5g00341 413 SMART rrm1_1 20 95 IPR000504 GO:0003723
Lapu5g00341 413 SMART rrm1_1 231 289 IPR000504 GO:0003723
Lapu5g00341 413 SMART rrm1_1 113 187 IPR000504 GO:0003723
Lapu5g00341 413 SUPERFAMILY RNA-binding domain, RBD 18 193 IPR035979 GO:0003676
Lapu5g00341 413 Gene3D - 18 98 IPR012677 -
Lapu5g00341 413 CDD RRM1_SECp43_like 20 100 - -
Lapu5g00341 413 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 112 191 IPR000504 GO:0003723
Lapu5g00341 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 114 178 IPR000504 GO:0003723
Lapu5g00341 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 21 89 IPR000504 GO:0003723
Lapu5g00341 413 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 232 284 IPR000504 GO:0003723
Lapu5g00341 413 Gene3D - 100 201 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00341 Lapu-Chr5 2836173 2839034 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00341 18 281 Eukaryotic Initiation Factors Gene Family AT1G49760 24.911 1.37e-15 77.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00341 - - gmx:100799421 720.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00341 5 2836173 2839034 Lapu5g00341 5 2836173 2839034 ECH
Lapu5g00341 5 2836173 2839034 Lapu11g00626 11 9412137 9415760 PCT