Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00334 ATGACTCACCCCTACTGCTCCAATGACTTCAATGCTTGGTTTGACCTCAATTCTCCATTCCTTTTCTCCTCTTCTTCATCACCTTGCTCCAACCCTCCATTCTATTTTCCTTCTTCTTATCATCATAACCTCACAAGTGCCATCTCTTTTACTCACCACCAATCTTCTTCTCCCCCAAAAGAAGCACTTCCTCTCCTTAACCTAAGCCCTGCAAGAGGTGAAGATCTTGAATCTTCCTTTAGTGCCATGAAAGTCAACAAAGAGAAGGAGAGAGAACTAAGCATATCGTCTAATAATAACTCTTTGGATGATGAAACTGTGACGGTGGCTTTGCACTTAGGGCTTCCAACCTCTGCTACTTCGGCTGATTTAACTTCAAACACATACTCAGACAAAGAAAAGGCCACGCTTGCTTGTGAGTATTCTCCTACTAGAATTAACAAGGGTCAGTATTGGATCCCTACCCCTGCTCAAATTCTCATCGGTCCAACACAGTTCTCATGCCCCCTTTGTTTCAAGACGTTCAACAGATACAACAACATGCAGATGCATATGTGGGGGCATGGATCTCAATATAGAAAGGGGCCAGAGTCTCTAAGGGGAACTCAGCCAACAGCAATGCTTAGACTCCCTTGCTATTGTTGTGCACCTGGATGCAAGAACAACATTGACCATCCAAGAGCAAAGCCACTCAAAGACTTTAGGACCCTGCAAACTCATTACAAGAGAAAGCATGGAATCAAGCCCTTCATGTGTAGAAAATGTTGCAAAGCATTTGCTGTGAGGGGTGATTGGAGGACTCATGAGAAGAACTGTGGGAAGCTATGGTATTGCTCTTGTGGGTCCGATTTCAAGCACAAAAGATCTCTTAAAGACCATATCAAGGCATTTGGGAATGGACATAAAGCTTATGGAATCGACTGTCTTGATCAAGATGATGAAGCTGGCTCTGAAATCGAGCAAGAAACTGTTAATGAATCCTTAGTTTCAAAAGTCATAGTTGATGCGTGA 1011 0.4322 MTHPYCSNDFNAWFDLNSPFLFSSSSSPCSNPPFYFPSSYHHNLTSAISFTHHQSSSPPKEALPLLNLSPARGEDLESSFSAMKVNKEKERELSISSNNNSLDDETVTVALHLGLPTSATSADLTSNTYSDKEKATLACEYSPTRINKGQYWIPTPAQILIGPTQFSCPLCFKTFNRYNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRLPCYCCAPGCKNNIDHPRAKPLKDFRTLQTHYKRKHGIKPFMCRKCCKAFAVRGDWRTHEKNCGKLWYCSCGSDFKHKRSLKDHIKAFGNGHKAYGIDCLDQDDEAGSEIEQETVNESLVSKVIVDA* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00334 336 ProSiteProfiles Zinc finger C2H2 type domain profile. 166 193 IPR013087 -
Lapu5g00334 336 Gene3D Classic Zinc Finger 165 188 - -
Lapu5g00334 336 FunFam Zinc finger protein WIP2 219 301 - -
Lapu5g00334 336 ProSitePatterns Zinc finger C2H2 type domain signature. 168 188 IPR013087 -
Lapu5g00334 336 Gene3D Classic Zinc Finger 248 327 - -
Lapu5g00334 336 PANTHER ZINC FINGER PROTEIN WIP2 25 323 IPR043584 GO:0003700|GO:0010468
Lapu5g00334 336 SUPERFAMILY beta-beta-alpha zinc fingers 157 188 IPR036236 -
Lapu5g00334 336 SUPERFAMILY beta-beta-alpha zinc fingers 232 270 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00334 Lapu-Chr5 2768637 2770946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00334 1 331 C2H2 Transcription Factor Family AT3G57670 55.784 4.33e-132 380
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Lapu5g00334 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00334 - - vum:124825208 587.03
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00334 5 2768637 2770946 Lapu5g00334 5 2768637 2770946 ECH
Lapu1g00140 1 6581321 6583985 Lapu5g00334 5 2768637 2770946 ECH