LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Lapu5g00332	ATGGCAGAGGAACTTGACCTCGGCAACCTGAAGCCATTGAAAGTTTTAGGCAAAGGAGCCATGGGCACTGTGTTTCTTGTGCAACACAACTCCTGCCACGTCGCACTCAAAGTCGTCGACAAATCATCGTCCCTCCATGACGGTTCTCGCCGCGCCCTCTGGGAAATCAGCGTTCTCTCTCGCTTATCCCACCCTTTCCTCCCCACACTATTAGGCTCCTTCGAGTCCAACAACTTAATGGGCTGGGCCGTCCCCTACTGCCCCGGCGGCGACCTCAACCTCCTCCGCTACCGCCAAACAGATCACGTATTCTCCCCCGCCGTCATCCGCTTCTACCTCGCCGAGATCCTCTGCGCCCTCCACCATCTCCACTCCATGCACATCGCATATCGCGACCTCAAACCCGAAAACGTCCTCATCCAACAATCCGGCCACGTCACCCTCACCGACTTCGACCTCTCCCGAACCCTATCTCCCACCAAAACCAACACCTCTCCTTCCAACTCCGACATTCCTGACACCGCTCCGCGCAAACCCCGCCGCAACTTCCGCTGGGCTCCACTCACCAAGGCCCCCAAGTCCGCCCGAGTCACTCCCGCCGCTCGCCGCGCCGCGCTGAGCTTCGAGCGTTCGAACTCGTTCGTCGGCACCGAGGAGTACATCGCGCCGGAGGTCCTCCGAGGCGAGGGGCACGGCTTCGCCGTCGACTGGTGGGCCCTCGGCGTCCTCGCCCACGAGATGCTCTACGGAACGACGCCGTTCAAGGGGAAGAATCGCAAGGAAACGTTTCGCAACGTGTTGTTGAAGACGCCGGAGTTTGTTGGAAAGAAAACAGCGTTGACGGACCTAATCTCTCGGTTGCTCGAAAAGGACCCCTCCAAGCGTTTGGGTTATGTTCGTGGCGCCACCGAGATCAAGGAGCACGAGTTCTTCAGAGGGGTTAAGTGGGACCTACTAACGGAAGTTATGCGGCCGCCGTTTATTCCTTCAAGAGACGACGTTACCAAGCCTTTCGCCGATGGACTCGACATAAGGGGATACTTTCAGAGCTTGAAATCTCCGCCGTCTTTGCCCCCTTCGCCGTTACGGTCGCCGTCATTGGAGTTTCAGAAGAATGTTTCTTTACCGGAATTCTGA	1137	0.5787	MAEELDLGNLKPLKVLGKGAMGTVFLVQHNSCHVALKVVDKSSSLHDGSRRALWEISVLSRLSHPFLPTLLGSFESNNLMGWAVPYCPGGDLNLLRYRQTDHVFSPAVIRFYLAEILCALHHLHSMHIAYRDLKPENVLIQQSGHVTLTDFDLSRTLSPTKTNTSPSNSDIPDTAPRKPRRNFRWAPLTKAPKSARVTPAARRAALSFERSNSFVGTEEYIAPEVLRGEGHGFAVDWWALGVLAHEMLYGTTPFKGKNRKETFRNVLLKTPEFVGKKTALTDLISRLLEKDPSKRLGYVRGATEIKEHEFFRGVKWDLLTEVMRPPFIPSRDDVTKPFADGLDIRGYFQSLKSPPSLPPSPLRSPSLEFQKNVSLPEF*	379

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Lapu5g00332	378	SUPERFAMILY	Protein kinase-like (PK-like)	8	358	IPR011009	-
Lapu5g00332	378	Gene3D	Phosphorylase Kinase; domain 1	11	90	-	-
Lapu5g00332	378	MobiDBLite	consensus disorder prediction	157	182	-	-
Lapu5g00332	378	FunFam	Serine/threonine-protein kinase OXI1	209	330	-	-
Lapu5g00332	378	MobiDBLite	consensus disorder prediction	157	172	-	-
Lapu5g00332	378	Gene3D	Transferase(Phosphotransferase) domain 1	91	163	-	-
Lapu5g00332	378	SMART	serkin_6	10	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu5g00332	378	Pfam	Protein kinase domain	211	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu5g00332	378	Pfam	Protein kinase domain	13	165	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
Lapu5g00332	378	ProSiteProfiles	Protein kinase domain profile.	10	311	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Lapu5g00332	Lapu-Chr5	2757334	2758742	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Lapu5g00332	3	378	AGC Kinase Gene Family	AT3G20830	58.750	7.59e-145	415

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Lapu5g00332		Pkinase	1.7e-34	CL0016

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Lapu5g00332	-		-	gmx:100802613	560.451

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Lapu5g00332	5	2757334	2758742	Lapu5g00332	5	2757334	2758742	ECH
	Lapu5g00332	5	2757334	2758742	Lapu11g00638	11	9545519	9547192	PCT

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