Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00287 ATGAAAATTCAGTGTGATGTCTGTGAGAGAGCTCCAGCAACTGTGATTTGCTGCGCAGATGAGGCAGCTTTGTGTGCCAAATGTGATGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAAAGGCTTCTTCTTCAATGTCTATCAAACAAGCTTCCCAGATGTGACATTTGCCAAGACAAGCCAGCATTCATATTTTGTGTTGAAGACAGAGCACTCTTCTGTCAGGACTGTGATGAACCAATTCATTCAGCTGGAAGCCTTTCTGCAAACCACCAGCGCTTCCTAGCTACTGGTATCCGAGTGGCCTCAAGTTCTAATTGCACCAAAGACAATGAAAATAATCACTTGGAACCTCCTAATAGGAAAGCACAACAAGTTTCCACGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCTCATCCTCTTGGGCTGTTGATGACTTTTTGGAATTAACAGGCTTTGAATCACCTGAGAAAAAGGAATCTCTACAATTTGGAGAGCTGGAATGGCTTACAGATGTGGGTATTTTCGGTGAAGAATTTACTGAGGAAGCCTTGGCGGCGGCAGAAGTACCTCAGCTTCCAGTAACTCATAATAGCAGCAGTGTTGCCTCATACAGAACCTCCAAGTCCTACACGTCACACAAAAAGCCTAGGATTGAAGTCCTAAATGATGATGATGATGATGAGTACTTTACTGTGCCTGATCTTGGCTAA 723 0.4398 MKIQCDVCERAPATVICCADEAALCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKPAFIFCVEDRALFCQDCDEPIHSAGSLSANHQRFLATGIRVASSSNCTKDNENNHLEPPNRKAQQVSTKVPSQQVPSFSSSWAVDDFLELTGFESPEKKESLQFGELEWLTDVGIFGEEFTEEALAAAEVPQLPVTHNSSSVASYRTSKSYTSHKKPRIEVLNDDDDDEYFTVPDLG* 241
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00287 240 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Lapu5g00287 240 CDD Bbox1_BBX-like 5 47 - -
Lapu5g00287 240 Gene3D Classic Zinc Finger 1 92 - -
Lapu5g00287 240 ProSiteProfiles Zinc finger B-box type profile. 52 99 IPR000315 GO:0008270
Lapu5g00287 240 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 239 - -
Lapu5g00287 240 MobiDBLite consensus disorder prediction 199 213 - -
Lapu5g00287 240 CDD Bbox1_BBX-like 57 98 - -
Lapu5g00287 240 MobiDBLite consensus disorder prediction 199 220 - -
Lapu5g00287 240 Pfam B-box zinc finger 4 44 IPR000315 GO:0008270
Lapu5g00287 240 Pfam B-box zinc finger 52 95 IPR000315 GO:0008270
Lapu5g00287 240 SMART bboxneu5 52 99 IPR000315 GO:0008270
Lapu5g00287 240 SMART bboxneu5 4 47 IPR000315 GO:0008270
Lapu5g00287 240 MobiDBLite consensus disorder prediction 110 129 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00287 Lapu-Chr5 2350489 2359597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00287 1 161 Orphan Transcription Factor Family AT1G06040 66.667 3.70e-68 206
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Lapu5g00287 zf-B_box 1.1e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00287 - - vun:114183169 463.381
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00287 5 2350489 2359597 Lapu5g00287 5 2350489 2359597 ECH
Lapu5g00287 5 2350489 2359597 Lapu11g00676 11 9901524 9905190 PCT