Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00282 ATGCTGCCTCCTACCAAATCCGTGGAAAACGAGGAGTGGGGAACCCCAACCAGCAGCCTCTGGGTTGGAAATCTGCCGCCGGAGGTCTCCGATTCCGATCTCATGGACCTCTTCGCTCCCTACGGTTCTCTCGACACACTCATTTCCTATTCCTCACGCACCTTCGCTTTCGTGTTGTTCGGACGCGTCGAAGACGCTAAGGTCGCGAAAACCAACTTACAAGGCGCCTCGCTGCGCGGGTTTCAAATCAGAATCGAATTTGCAATACCGGCAAGGCCGTGTAAACAGTTATGGGTGGGTGGTGTTACCCACGCTGTAGCTAAGGAGGATTTGGAAGCGGAATTTCGTAAATTCGGTAAGATTGAAGATTTTAAGTTCTTCAGAGACCGTCGTACTGCGTGTGTTGAGTTTCTCAATTTGGATGATGCTACGCGGGCCATGAAAGTCATGAACGGGAAGCGATTAGCTGGCGGCCATATTTGTGTGGACTTCCTTAGGTTACAATCTACGAATAGAGATTTTTTGGTTGACAAAGGGCAGTTTCAGGCTAGACCACAGCATTTACAACCTTCAATGGGGAGGAATAGTCAACCCAGTAACATTTTGTGGATAGGTTTTCCTCCTTCATTTCAAATTGATGAACAGATGCTCCACAATGCCATGATTTTGTTTGGTGAAATTGAGAGAATCAAGAGTTTTCCTTCAAGACATTATTCATTTGTTGAGTTTAGAAGCACTGATGAAGCTCGCCGTGCCAAAGAGGGCCTTCAAGGACGGCTTTTTAATGATCCTCGAATAACGATTATGTATTCAAGCAGTGATATGACACCCGGCAAAGATTACCCTGGATTTTATCCTGGAAGTAAAGGGCCTTTACCTGATGGATTAGTTAATGAGCATCCATTTCGACCACCACAAACAGATGTATTTGGTCAAAATCGTCCTATTGTTCCAAATAATTTTCCCGGGCAATTGCCACCTGGCAATATTAGTGGACCTAATGTCCCAATGCGACCTTTTGTTCCTCAAGGTCTTGAACCTCTTAACTCTGGTCCTGATTTTAATGAGATGAGCACACTTCACAAACTTCAAGATGGTAGCTCTAAAATGGGTCCAAGCTGGAAAAGGCCATCTCCGCCTGCCCCAGGTATTCTTTCTTCTCCGATGCCTGGTATTAGGCCCTCCTCTGGCCCTTGGGATGTGCTTGGCACAAACCAACTTTCAAGAGATTCTAAACGTTCAAGGTTAGATGATGCTTTACTTATTGGTGATGCTCCATTTCCTTTAAGAAATATCGATGACCGTGGATTAAGATTTGAACAACCATTTGCAATTGATCCACTTATTGATGGAGGTGGTTCTGGTCCAAAGAGTCACCCTGGTCCAGTGGGCACCAGGATCACATCTGGAGTACCTGGTTCTGTCCAACCTGATATTGATCACATATGGCGTGGAATTATTGCAAAAGGGGGAACTCCTGTTTGTCGTGCTAGATGTGTGCCTATTGGAAAAGGGATAGGCACTGAGATTCCTGATGTTGTAGATTGTGCCGCCAGGACTGGATTGGATATGTTAGCGAAACACTATGCTGATGCAATTGGCTTTGAAATTGTTTTCTTTCTCCCTGATAGTGAAGAGGATTTTGCTTCATACACTGAATTCCTTCGTTACCTTAAAGCAAAAAACCGTGCTGGTGTTGCCAAGTTTGTCGACAACACCACCTTATTTTTGGTACCTCCTTCTGATTTCTTGTCCAAGGTTTTGAAAGTCACGGGACCTGAACGATTATATGGTGTGGTTCTTAAGTTTCCTTTAGTTCCAAGTAGCACATCTATGCAACAAGCAATGCATTTTGCGTCGCCCTCTACTCAGTATGTGCAACAGATTCTCCCTTCACAACCTGAGTATGGTTCAATCTCTGTAAAGGAGCAACCAATTTTACCAATGGAATATAACAGATTGTTGCATGATGATTCTAAGCGTCTGCCAAAACAACTTCATCTTGCTACCAGTGCCACTCCTCCAGCTCATTCTGTTCCTCCTGATTATGCTTCTACATATACAGCTTCTGCATCCCAAGCAGGAGTTACTTTGACACCTGAACTTATTGCAACTTTAAGTTCTTTTCTCCCTTCAACTATACAATCGTCAACAGCTGGTGGCACAATGGCAGTGGTTGGTCCCTCTGCTGTGAAGCCACCCTTTCCATCTGTTGCATCTAATGATGGAAATCAATCTCATTTGTGGAAACAAGATCTGAAAACTGCAGATCCACCTAGCTATCCTCCTCAACACTTTGGAACGATTCATAATGCTCAATATCATACTTATACACCTGCATCTTCTACTGGGCACCCTGCTCAAGTTGTATCTGGCAGTTCTCATTTCCATGATAGTGCTTCAAGTCTTCAGCAGCTTGGTGCTGTTTCATCATCTACATCCGTGACTAATTTCATTATACCTCCTCAAAATGGACAGGAAGCTGTTCCCCCTCAAGGCAGTCAACAGTATCAGGTGGAAGTCCCCCACATCACTGAGAAAGGCTATGGAGTAGTTCAGGGAACAGATCCCTCTGTTCTATATAGTTCTAAGGCATTCCAACAACCTAATAATTTTATCCCCTCATCCAACCAAGTTTCCAATGCTGCTTCACAGCAACACATAAATTCAGAGCCCCCAAATCAGCAACTTCAACATGCTTTATGTGGAGCTGGCCAGGGAATCAACGAATTGGAGGCTGATAAGAACCAGAGGTACCACTCAACACTACAGTTTGCTGCAAACCTTCTCTTCCAGATACAGCAAAAGCAAACCCAAGGAGAGCATGGGCCTGAAAATCAACAATAA 2847 0.4443 MLPPTKSVENEEWGTPTSSLWVGNLPPEVSDSDLMDLFAPYGSLDTLISYSSRTFAFVLFGRVEDAKVAKTNLQGASLRGFQIRIEFAIPARPCKQLWVGGVTHAVAKEDLEAEFRKFGKIEDFKFFRDRRTACVEFLNLDDATRAMKVMNGKRLAGGHICVDFLRLQSTNRDFLVDKGQFQARPQHLQPSMGRNSQPSNILWIGFPPSFQIDEQMLHNAMILFGEIERIKSFPSRHYSFVEFRSTDEARRAKEGLQGRLFNDPRITIMYSSSDMTPGKDYPGFYPGSKGPLPDGLVNEHPFRPPQTDVFGQNRPIVPNNFPGQLPPGNISGPNVPMRPFVPQGLEPLNSGPDFNEMSTLHKLQDGSSKMGPSWKRPSPPAPGILSSPMPGIRPSSGPWDVLGTNQLSRDSKRSRLDDALLIGDAPFPLRNIDDRGLRFEQPFAIDPLIDGGGSGPKSHPGPVGTRITSGVPGSVQPDIDHIWRGIIAKGGTPVCRARCVPIGKGIGTEIPDVVDCAARTGLDMLAKHYADAIGFEIVFFLPDSEEDFASYTEFLRYLKAKNRAGVAKFVDNTTLFLVPPSDFLSKVLKVTGPERLYGVVLKFPLVPSSTSMQQAMHFASPSTQYVQQILPSQPEYGSISVKEQPILPMEYNRLLHDDSKRLPKQLHLATSATPPAHSVPPDYASTYTASASQAGVTLTPELIATLSSFLPSTIQSSTAGGTMAVVGPSAVKPPFPSVASNDGNQSHLWKQDLKTADPPSYPPQHFGTIHNAQYHTYTPASSTGHPAQVVSGSSHFHDSASSLQQLGAVSSSTSVTNFIIPPQNGQEAVPPQGSQQYQVEVPHITEKGYGVVQGTDPSVLYSSKAFQQPNNFIPSSNQVSNAASQQHINSEPPNQQLQHALCGAGQGINELEADKNQRYHSTLQFAANLLFQIQQKQTQGEHGPENQQ* 949
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00282 948 PANTHER RNA RECOGNITION MOTIF-CONTAINING 15 88 - -
Lapu5g00282 948 FunFam Flowering time control protein FPA 10 92 - -
Lapu5g00282 948 CDD RRM_SF 97 163 - -
Lapu5g00282 948 FunFam flowering time control protein FPA 194 286 - -
Lapu5g00282 948 Gene3D - 5 91 IPR012677 -
Lapu5g00282 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 18 90 IPR000504 GO:0003723
Lapu5g00282 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 97 157 IPR000504 GO:0003723
Lapu5g00282 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 211 266 IPR000504 GO:0003723
Lapu5g00282 948 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 20 84 IPR000504 GO:0003723
Lapu5g00282 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 200 273 IPR000504 GO:0003723
Lapu5g00282 948 Pfam SPOC domain 477 594 IPR012921 -
Lapu5g00282 948 Gene3D - 92 175 IPR012677 -
Lapu5g00282 948 CDD RRM_SF 20 86 - -
Lapu5g00282 948 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 95 167 IPR000504 GO:0003723
Lapu5g00282 948 SMART rrm1_1 96 163 IPR000504 GO:0003723
Lapu5g00282 948 SMART rrm1_1 19 86 IPR000504 GO:0003723
Lapu5g00282 948 SMART rrm1_1 201 269 IPR000504 GO:0003723
Lapu5g00282 948 SUPERFAMILY RNA-binding domain, RBD 16 169 IPR035979 GO:0003676
Lapu5g00282 948 CDD SPOC_FPA-like 482 602 - -
Lapu5g00282 948 FunFam Flowering time control protein FPA isoform A 93 193 - -
Lapu5g00282 948 SUPERFAMILY RNA-binding domain, RBD 185 274 IPR035979 GO:0003676
Lapu5g00282 948 MobiDBLite consensus disorder prediction 365 405 - -
Lapu5g00282 948 Gene3D - 179 277 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00282 Lapu-Chr5 2311714 2326158 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00282 97 268 Eukaryotic Initiation Factors Gene Family AT4G34110 28.415 1.22e-07 53.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00282 - - gmx:100806555 1505.73