Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00279 ATGCACTTAAGTCCTTACACTGCTACTCCAAAGAAGCCTTCATCACACTCCAATAACCACCACCACCACCACCATAACACCAACGTTCTTGATGAAGCTGCAGCGTTAGATAACAACAACATGCATCGCAGCAACCAGAGCCACACATCCACCAGTCGTTCTTCCGACTCCAGTGAGCCCAATGAAGATGGGAAATGGGCACCTAAGCTTCTGAGAGAGTGTGCAAAAGCAATATCAGAGAGAGACTCCACGAAAACACACCATCTTTTGTGGATGCTTAACGAGCTGGCTTCACCCTATGGTGACTGCGATCAAAAACTCGCGTCTTACTTCTTGCAAGCTTTGTTCTGCAGAGCCACTGAGTCCGGTGAGAGATGCTACAAGACACTCTCCTCCGTGGCTGAGAAGAACCACTCGTTCGATTCCGCCAGGAGGTTGATTCTCAAGTTCCAAGAGGTGAGCCCTTGGACCACGTTTGGACACGTGGCCTCCAACGGGGCCATCTTGGAGGCCTTGGAGGGAGAGCCAAAACTCCACATCATCGATCTCAGCAACACACTTTGCACGCAGTGGCCTACTTTGTTGGAAGCTTTGGCCACGCGAAACGACGAAACGCCACACCTCAAACTCACTGTGGTGGCGCTTGCGGGGTCGGTGATGAAGGAGGTTGGTCAACGGATGGAGAAGTTCGCGAGGCTCATGGGCGTGCCCTTTGAATTCAACGTGATTAGTGGCTTCAGGGATCTCACAAAAGAAGGTTTGGGGGTTCAGGAAGATGAAGCTATCGCCGTGAATTGCGTTGGGGCGTTGAGAAGAGTAGAGGTTGAAGAAAGGGAAAACTTAATTCGCGTGTTCAAGTCTCTTGGTCCTAAAGTGGTGACAGTTGTTGAGGAAGAAGCTGATTTTTGCAGCTCGAGAGAGGATTTCGTGAAGTGCTTCGAGGAGTGTCTGAAGTTCTACTCTCTCTACTTCGAGATGCTTGAGGAGAGTTTTCCCCCGACGAGTAACGAGAGGTTGATGTTGGAGAGGGAGTGTTCGAGGAGCATAGTTAGGGTTTTGGCATGCTGTGGTAGTGGTGATGATGATTTAGAAGATGATGGAGACGAGTTTGACTGTTGTGAGAGGAGGGAGAGAGGGACGCAGTGGTGTGAGAGGCTGAGGAATGCTTTTTCACCGGTTGGATTCAGCGATGATGTGGTGGATGATGTGAAAGCATTGCTGAAGAGGTACCAACCAGGGTGGTCACTTGTGGTGTCTCAGGGTGATGATCATCTCTCTGGGATTTACTTGACATGGAAGGAGGAACCAGTGGTTTGGGCTTCAGCATGGAAACCCTAG 1338 0.503 MHLSPYTATPKKPSSHSNNHHHHHHNTNVLDEAAALDNNNMHRSNQSHTSTSRSSDSSEPNEDGKWAPKLLRECAKAISERDSTKTHHLLWMLNELASPYGDCDQKLASYFLQALFCRATESGERCYKTLSSVAEKNHSFDSARRLILKFQEVSPWTTFGHVASNGAILEALEGEPKLHIIDLSNTLCTQWPTLLEALATRNDETPHLKLTVVALAGSVMKEVGQRMEKFARLMGVPFEFNVISGFRDLTKEGLGVQEDEAIAVNCVGALRRVEVEERENLIRVFKSLGPKVVTVVEEEADFCSSREDFVKCFEECLKFYSLYFEMLEESFPPTSNERLMLERECSRSIVRVLACCGSGDDDLEDDGDEFDCCERRERGTQWCERLRNAFSPVGFSDDVVDDVKALLKRYQPGWSLVVSQGDDHLSGIYLTWKEEPVVWASAWKP* 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00279 445 Pfam GRAS domain family 69 444 IPR005202 -
Lapu5g00279 445 MobiDBLite consensus disorder prediction 41 57 - -
Lapu5g00279 445 ProSiteProfiles GRAS family profile. 58 444 IPR005202 -
Lapu5g00279 445 MobiDBLite consensus disorder prediction 1 25 - -
Lapu5g00279 445 MobiDBLite consensus disorder prediction 41 66 - -
Lapu5g00279 445 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 57 434 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00279 Lapu-Chr5 2276458 2278415 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00279 42 445 GRAS Transcription Factor Family AT4G37650 51.869 3.74e-145 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Lapu5g00279 GRAS 1.2e-94 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00279 - - gmx:100818806 748.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00390 10 6281202 6282827 Lapu5g00279 5 2276458 2278415 PCT