Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00273 ATGGAATACCCTTTTTGTTCCAAGGAAAGAGAAATTGGGGATTGGCAATCTTCCGGAACTCAGTTGGTGGGATCAACATCATTAGATGGCAGAATGAGCAATTCAATATCTGAGGATATGCCCGATAGCTTCTCAGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGCAACAGCCCACCCATATCTGATCAGATTTTGGCTAATGAGCTTCCAGCATTTGCTTCATTATCATATTCTTTGCCTGATGGGTTCAATCTAGTCCAACAGAACAGTGGACAATGCTATACATCAGGAGCTGACAAAAATAACAACGATATGGAAAGCTCCCCCATTTATGGGGAGAAAGTTGCGTGTCAGCAAATGGACGCCCTACTTGGTTTCTTAAATGATGCAAATGAAGCAAATAACTTGAATTCTAAGCTAAAAATTAATGGCTCTTCTCAACATCTCAATAACACTGATGCAGGCAATTATATAATGTCCAGGCCACCTGCGTTGTCACTTGATGAGAGAATGCTGAGGGCCTTGTCCTTCTTTAAGGAATCAGCTGGAGGGGGAATATTAGCACAAGTTTGGGTACCCATAAAGGATGGTGATCAATTCATCTTAAGCACGAGTGAACAACCTTATTTGCTAGATCAAATGCTTGCAGGGTATCGTGAAGTGTCCAGGACATTTACATTTTCTGCAGAAGGAAAATCTGGTTGTTTCCTGGGACTTCCTGGTCGTGTGTTTACCTCCAAAGCTCCTGAGTGGACATCAAATGTTGGTTATTACAATATGAGTGAGTACTCAAGGTTTGAGCATGCAATTTATCACCATGTTCGTGGATCAATTGCATTTCCCATATTTGATGTGCACTCGGACTTGCCATGTTGTGCTGTACTGGAAATTGTCACTACAAAGGAAAAGCCAGATTTCAACAGAGAATTGGAAATTGTTTGCCATGCTCTCCAGCTTGTGAATTTAAGGACCACAAAGCCTCTTCGATGTCCTCGCCAGTGTCTTTCAAACAACAAAAAGGCTACTTTGACTGAGATAGTTGATGTGCTACGTTCTGTCTGTCACGCACATAGATTACCGCTGGCTCTGACATGGGTTCCCTGTTGTTACACTGAGGGATCAAGAGGTGAAGCTACAAGGATACAAACTAAAGGGGGTCAATCAACTATTGGTGCCAAAAACATACTCTGCATTGAAGAATCTGCTTGCTATATAACTGATAGAGCACTGGCAGGATTTGTCCGTGCATGCACAGAACATTATCTTGAGGAAGGGAAAGGTATAGCTGGAAAAGCTCTTCGATCAAATCATCCTTTCTTTTATCCTGATGTGAAGACGTATAATATTAGTGAATATCCACTTGTCCATCATGCCCGCAAGTATAATTTGAATGCTGCAGTTGCAATTAGGCTAAGGAGTACTTATACTAATCATGATGATTACATATTGGAATTCTTTCTGCCTGTTAACATGAGAGGGGGTTCAGAACAGCAACTTTTATTAGACAACCTATCAGGTACCATGCAGAGAATTTGTAGTAGTTTGAGGACAGTTTCAGATGCCGAATTATCAAGAATAGAAAGTTCACAAGAAGGGTTTGAAAAGAAAAATGCCCCCTGTTTTTTTCCTTTCTCAAGTGGAAACTCTGAAGTACCATTAATAAATGGTGACTATCATTCTGTCCCAAAGATGTCATTGAAGGCAACTAACGCAAGAGACAATGAAATTGAGCCTTCTGCTAACCAGGCAAGAAATGAAACAAAAAGACAGGTCCAGAAAAATAAAAGTACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAACAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAGACATCGGTGTTTGCCCGACAACTCTGAAAAGGATATGCAGGCAACATGGAATTTCGAGGTGGCCATCCCGTAAGATTAATAAAGTGAATCGATCACTGAAGAAGATACAGACTGTGCTTGATTCTGTCCGGGGAGCGGAAGGAGGGTTGAAGTTTGATCCCTCTATGGGGGCATTCGTGGCAGGAGGGTCAATCATCCAGGATACCCATGCACATAAAAGTCTTCTGTTTCCTGTGAAAAGTATTATAAAAGACCCTGCACTTGTTACACAAGAGGCAGTTCCGCTACCAACTGCACCTTGTAGTGAAGCTGAGAATTTTTCAATTAAGTTGGAAGAAAAATTGAAGAAAACCAATGCTTTTTCCGTTGGTTGTAGTGAGGATTCAAAATCAATGGCAATGGATGATGGGTCATGCCAAATGGAAAGCATTTGCACTAAGGTGCAGGATTCTCCTGAACAAGCTTGTTTGGGTTCTGTTCTTCCAAAAGAACAGGATAAACGGATTCTGAACAAGAGTGGTTTAAGAGGAGAAAATTGTAAATGCAGTATTCTTGGCCAGAGTTCAAATTCCTTGATTGGCGATGAGATGGACATTGGTGTTTATGGGAATGCTGGGGTTGTTGAGCCTAACCATCGTACTTCCTCAAGCTTGACCGATTCATCTAATGGCTCTGGTTCAATGATGCATAGCATTTCGTCAGGTTCTCAGAGCTTCGAGAACCAGAATCAGTCAAAAGTTAAATCAACGATTGTTGATAGTGGGTCAAAACTAATTGTCAAAGCTATCTATAGAGAAGACACCATTCGTTTCAAGTTTGATCGATCTGCTGGTTGTTTTAGGTTATATGAAGAAGTTGCATCAAGATTCAAACTACAAACTGGGTCATTCCAGCTCAAATATCTAGATGATGAAGAGGAATGGGTGATGTTGGTGAATGACGCCGATTTGCAAGAGTGTCTAGAAATATTGGATGATATCGGTACATGCAGCGTCAGGTTTCTTATTCGTGATTTGCCTTCCGTTTTAAGCAGTTCTGGCAGTAGCAATAGCTACTTGGGAGGCAGCTCATAA 2940 0.4116 MEYPFCSKEREIGDWQSSGTQLVGSTSLDGRMSNSISEDMPDSFSELMNFDTYAGLCNSPPISDQILANELPAFASLSYSLPDGFNLVQQNSGQCYTSGADKNNNDMESSPIYGEKVACQQMDALLGFLNDANEANNLNSKLKINGSSQHLNNTDAGNYIMSRPPALSLDERMLRALSFFKESAGGGILAQVWVPIKDGDQFILSTSEQPYLLDQMLAGYREVSRTFTFSAEGKSGCFLGLPGRVFTSKAPEWTSNVGYYNMSEYSRFEHAIYHHVRGSIAFPIFDVHSDLPCCAVLEIVTTKEKPDFNRELEIVCHALQLVNLRTTKPLRCPRQCLSNNKKATLTEIVDVLRSVCHAHRLPLALTWVPCCYTEGSRGEATRIQTKGGQSTIGAKNILCIEESACYITDRALAGFVRACTEHYLEEGKGIAGKALRSNHPFFYPDVKTYNISEYPLVHHARKYNLNAAVAIRLRSTYTNHDDYILEFFLPVNMRGGSEQQLLLDNLSGTMQRICSSLRTVSDAELSRIESSQEGFEKKNAPCFFPFSSGNSEVPLINGDYHSVPKMSLKATNARDNEIEPSANQARNETKRQVQKNKSTSEKNVSLSVLQQYFSGSLKDAAKDIGVCPTTLKRICRQHGISRWPSRKINKVNRSLKKIQTVLDSVRGAEGGLKFDPSMGAFVAGGSIIQDTHAHKSLLFPVKSIIKDPALVTQEAVPLPTAPCSEAENFSIKLEEKLKKTNAFSVGCSEDSKSMAMDDGSCQMESICTKVQDSPEQACLGSVLPKEQDKRILNKSGLRGENCKCSILGQSSNSLIGDEMDIGVYGNAGVVEPNHRTSSSLTDSSNGSGSMMHSISSGSQSFENQNQSKVKSTIVDSGSKLIVKAIYREDTIRFKFDRSAGCFRLYEEVASRFKLQTGSFQLKYLDDEEEWVMLVNDADLQECLEILDDIGTCSVRFLIRDLPSVLSSSGSSNSYLGGSS* 980
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00273 979 ProSiteProfiles PB1 domain profile. 879 961 IPR000270 GO:0005515
Lapu5g00273 979 MobiDBLite consensus disorder prediction 574 589 - -
Lapu5g00273 979 Pfam PB1 domain 882 959 IPR000270 GO:0005515
Lapu5g00273 979 MobiDBLite consensus disorder prediction 573 600 - -
Lapu5g00273 979 MobiDBLite consensus disorder prediction 17 38 - -
Lapu5g00273 979 SMART PB1_new 879 961 IPR000270 GO:0005515
Lapu5g00273 979 CDD PB1_NLP 880 960 IPR034891 -
Lapu5g00273 979 SUPERFAMILY CAD & PB1 domains 874 964 - -
Lapu5g00273 979 MobiDBLite consensus disorder prediction 833 861 - -
Lapu5g00273 979 PANTHER PROTEIN NLP8 136 971 IPR045012 GO:0003700
Lapu5g00273 979 Pfam RWP-RK domain 603 651 IPR003035 -
Lapu5g00273 979 ProSiteProfiles RWP-RK domain profile. 585 671 IPR003035 -
Lapu5g00273 979 Gene3D - 876 954 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00273 Lapu-Chr5 2214478 2221972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00273 1 976 NLP Transcription Factor Family AT2G43500 48.600 0.0 803
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Lapu5g00273 PB1 2.5e-15 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00273 - - gmx:100804426 1551.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00273 5 2214478 2221972 Lapu5g00273 5 2214478 2221972 ECH
Lapu5g00273 5 2214478 2221972 Lapu11g00689 11 10010012 10015925 PCT