Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00266 ATGTGTGACTCAGTCTCTTCTCAGCTTACAAACTTTCAACCCACAAAACATGCACACCTTCTGATTCCTCTCCAATTCATCCATCTTCCAAGTCAAGTGGATTATTGTCTAGGAGATCGGAAAACAATGAATTGCTTGGGTGAGAAAGATTGTGGTCTATTTTCTTCTCATTCAACATCACCCAATGCTCTTGGATGCCCGTCATTGGGGACTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATGTTCTGCCACAACAATGTAGCAGGAGCAAAACATTGAGCTTTCAATTCGAAGAGCAGGATTCATCTTCGACTCATTCCGGTCTATCTTATACAGAAGTTGGTTCAGCACAATCCGGTCAAATGTCTGTCCAGCATAGTTCTACTGGTTCAACACTTGGCACAACGGGGGAAAAGACTGTGGGATGTGTCATGAGGTCATTTATGGGGAATCAGGATTTCACCTTCCCTCCTCCACTACTGGATCACAGCCAAACACTTGCTCATATTGCACGTCACTATGCTGATCCATGGTATAGCATCCTAATGGCTTCTTCATGCGGTCCACAGTCTAAGCATGAAGATGAATTCTTAAAAGGATCTGATGAGATTCCTCATGTCCAGCCACTGGAAACTGCTCCTATTCGAATTCCTCTGCCATTGGACGTTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGACGAAGACAGTATCGAGCGAAACTTGAAGTACAAAGCAAACCCATCAAGGATCGGAAACCTTATCTCCATGAGTCCCGCCATCTACATGCAGTGAAGAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTGAAAAGCTTCAACAATCAAATCGTACACGTGGAAATACCGCAGAATCTAACATGCATCAAACAGAAAACTATAGAGATGGTGATAAATGCCACATATGCATCTAA 960 0.4323 MCDSVSSQLTNFQPTKHAHLLIPLQFIHLPSQVDYCLGDRKTMNCLGEKDCGLFSSHSTSPNALGCPSLGTSESRSLSLKVDVLPQQCSRSKTLSFQFEEQDSSSTHSGLSYTEVGSAQSGQMSVQHSSTGSTLGTTGEKTVGCVMRSFMGNQDFTFPPPLLDHSQTLAHIARHYADPWYSILMASSCGPQSKHEDEFLKGSDEIPHVQPLETAPIRIPLPLDVKEEPIYVNSKQYHAILRRRQYRAKLEVQSKPIKDRKPYLHESRHLHAVKRARGAGGRFLNTEKLQQSNRTRGNTAESNMHQTENYRDGDKCHICI* 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00266 319 Gene3D - 225 286 - -
Lapu5g00266 319 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 57 305 IPR001289 GO:0003700|GO:0006355
Lapu5g00266 319 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 227 282 IPR001289 GO:0003700|GO:0006355
Lapu5g00266 319 MobiDBLite consensus disorder prediction 104 137 - -
Lapu5g00266 319 ProSiteProfiles NF-YA/HAP2 family profile. 225 285 IPR001289 GO:0003700|GO:0006355
Lapu5g00266 319 PRINTS CCAAT-binding transcription factor subunit B signature 228 250 IPR001289 GO:0003700|GO:0006355
Lapu5g00266 319 PRINTS CCAAT-binding transcription factor subunit B signature 259 282 IPR001289 GO:0003700|GO:0006355
Lapu5g00266 319 ProSitePatterns NF-YA/HAP2 subunit signature. 230 250 IPR018362 GO:0003677|GO:0016602
Lapu5g00266 319 SMART cbf3 224 285 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00266 Lapu-Chr5 2177562 2181241 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00266 72 294 CCAAT-HAP2 Transcription Factor Family AT1G54160 39.914 1.63e-38 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Lapu5g00266 CBFB_NFYA 1.3e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00266 K08064 - gmx:100803893 358.607
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00266 5 2177562 2181241 Lapu5g00266 5 2177562 2181241 ECH
Lapu5g00266 5 2177562 2181241 Lapu10g00421 10 6599731 6604406 PCT
Lapu11g00738 11 10358919 10361674 Lapu5g00266 5 2177562 2181241 PCT