Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00265 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGCCGAAGAGCAGGCATCATCAAGGCCCTCACCACCGAGAAGGAGAATTTGTGCTTATATGGATTACCCAACGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAGGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGTTATCTTTAGTTGCTGTTCATAGTGATACATGGTTACTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAATGAACTACCGACAATATTTGAAGTTGTTACTGGTGCTGCAAAGAAAGTAGTTAAAGAGAAGTCTTCAGTTTCAAACAACAGTGGAAACAAATCTAAGTCTAACTCTAAAGCGTACGTGCCCTTCAACGCCGACCCCTCCTCGCCGGAGTCCTACTCCCTCGACGAGATCGTCTACCGCTCCCAGTCAGGCGGCCTCCTCGATGTCCAGCACGACATGGCCGCCCTCAAGCGCTTTGACGGCGAGTACTGGCGCTCCCTCTTCGACTCCCGCGTCGGCAAGACCACCTGGCCCTACGGCTCCGGCGTCTGGAGCAAGAAGGAGTGGGTCCTCCCCGAGATCCACGATGACGACATCGTCTCTGCCTTCGAGGGAAACTCCAACCTCTTCTGGGCCGAGCGTTTCGGCAAACAGTTTCTGGGCATGAACGAGTTGTGGGTCAAACACTGCGGAATAAGCCACACCGGCAGCTTCAAGGATCTCGGCATGACCGTTCTCGTTAGCCAAGTCAATCGCCTGAGAAAAATGAACCGCCCCGTCGTCGGTGTCGGCTGCGCTTCCACTGGTGACACCTCTGCAGCGCTGTCAGCCTATTGCGCTTCCGCTGGGATTCCTTCCATTGTCTTTTTGCCTGCTAATAGAATCTCTCTTGCTCAGCTTGTTCAGCCCATTGCCAATGGTGCCTTTGTGTTGAGTATCGACACTGATTTTGATGGGTGCATGCAGTTGATTCGAGAAGTCACTGCTGAGCTGCCTATCTATTTGGCCAACTCTCTCAACAGTTTGAGACTTGAGGGGCAGAAGACTGCTGCTATTGAGATTCTGCAGCAGTTTGATTGGCAGGTTCCTGATTGGGTCATTGTGCCTGGTGGGAATCTTGGCAACATTTATGCCTTTTACAAAGGGTTTAAGATGTGCCAAGAGCTTGGACTTGTGGACAAGATCCCAAGGCTTGTTTGTGCTCAGGCTGCAAATGCCGATCCTTTGTATCAGTACTTCAAGTCTGGGTGGAAGGAATTTAAGCCTATGAGGCCCAGCACTACCTTTGCCTCTGCCATTCAAATTGGTGACCCTGTTTCCATTGATAGGGCTGTTCATGCCATTAAGAGTTGCGATGGGATTGTGGAGGAGGCGACTGAGGAGGAGCTGATGGATGCTATGGCGCAGGCTGATTCCACTGGGATGTTTATTTGCCCCCACACTGGGGTTGCTTTGACTGCATTGTTTAAGCTCAGGAACAGTGGGGTTATTAAGGCCACTGATAGGACTGTGGTGGTTAGCACTGCTCATGGCTTGAAGTTCACTCAGTCCAAGATTGATTACCATTCTAAGAATATCAAGGAGATGGCTTGCCGCTATGCTAACCCACCCATGCAAGTGAAGGCTGATTTTGGGTCTGTTATGGATGTCTTGAAGACGTATTTGCAGAGTAAGGCTCATTAG 1779 0.4997 MEARSRSVEDIFEDFKGRRAGIIKALTTEKENLCLYGLPNEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGAAKKVVKEKSSVSNNSGNKSKSNSKAYVPFNADPSSPESYSLDEIVYRSQSGGLLDVQHDMAALKRFDGEYWRSLFDSRVGKTTWPYGSGVWSKKEWVLPEIHDDDIVSAFEGNSNLFWAERFGKQFLGMNELWVKHCGISHTGSFKDLGMTVLVSQVNRLRKMNRPVVGVGCASTGDTSAALSAYCASAGIPSIVFLPANRISLAQLVQPIANGAFVLSIDTDFDGCMQLIREVTAELPIYLANSLNSLRLEGQKTAAIEILQQFDWQVPDWVIVPGGNLGNIYAFYKGFKMCQELGLVDKIPRLVCAQAANADPLYQYFKSGWKEFKPMRPSTTFASAIQIGDPVSIDRAVHAIKSCDGIVEEATEEELMDAMAQADSTGMFICPHTGVALTALFKLRNSGVIKATDRTVVVSTAHGLKFTQSKIDYHSKNIKEMACRYANPPMQVKADFGSVMDVLKTYLQSKAH* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00265 592 Pfam Alfin 7 124 IPR021998 GO:0006355|GO:0042393
Lapu5g00265 592 FunFam Threonine synthase 1, chloroplastic 331 591 - -
Lapu5g00265 592 MobiDBLite consensus disorder prediction 133 161 - -
Lapu5g00265 592 Pfam Pyridoxal-phosphate dependent enzyme 234 540 IPR001926 -
Lapu5g00265 592 Gene3D - 126 346 IPR036052 -
Lapu5g00265 592 NCBIfam threonine synthase 221 546 IPR004450 -
Lapu5g00265 592 CDD Thr-synth_1 216 546 - -
Lapu5g00265 592 ProSitePatterns Serine/threonine dehydratases pyridoxal-phosphate attachment site. 261 275 IPR000634 GO:0006520|GO:0030170
Lapu5g00265 592 SUPERFAMILY Tryptophan synthase beta subunit-like PLP-dependent enzymes 137 587 IPR036052 -
Lapu5g00265 592 PANTHER CPG BINDING PROTEIN 5 150 IPR045104 GO:0006355|GO:0042393
Lapu5g00265 592 Gene3D - 347 592 IPR036052 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00265 Lapu-Chr5 2168429 2176651 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00265 6 149 Alfin-like Transcription Factor Family AT5G20510 71.613 7.53e-65 209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00265 K01733 - gmx:100813292 865.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu10g00422 10 6608041 6612879 Lapu5g00265 5 2168429 2176651 ECH
Lapu5g00265 5 2168429 2176651 Lapu5g00265 5 2168429 2176651 ECH
Lapu5g00265 5 2168429 2176651 Lapu10g00422 10 6608041 6612879 PCT