Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00263 ATGGGTTCAAATGCAGGAGAAGAGGAGTCTACCTTGATCGCCATTGATAGCGATAAGAACAGCCAAAACGCAGTGAAATGGGCTGTGGAACATCTCTTGAAGAACAACTCCTCTTGCACCCTCGTTCACGTCAGAACTAAGAACTTATATCAGAATGATTTGGAAGTTTTCCCAAAGCAAGGTCGCCCACCAACTGAAGAAGAACTGCACCAGTTTTTTCTTTCCTTTCGAGGATTTTGTGCTCGAAAAGGGGTCTCAGTTAAAGAGTTAGTTCTGCATGACATTGACGTATCAAAAGCGCTTACTAATTACATAATCGACAATTCTATCAACAATATTGTTGTTGGTGCTTCTCGCTCCAATGCTCTTATAAGGAAATTTAAAGATGTAGATGTGCCAACAAGCTTAGTAAAGTCTGTGCCACAATCCTGCATGGTGCATGTCATATCAAAAAGAAAAGTGCAGAATATTCGACCAGCAGGTCATTCTCAAAATACTACCATCACACCATCAAAATCTCTAAAAGGCATTAGGGAAAGTTTTCGGTCCAAAGATTTAAACAGAAAATCACTCAAATATAGATTTTGGCAAGGCTCAAACAATGAAGGGGTATCTCCAGTGACACCACACAAGACCAATGGAGAGACTAATTCTCCAAAACTATTGGATGAAACTTCCAATAAAAAATTCCTCACAGGTGACACTTCAAGGTTGTTTGATCATCAAACAAGTGAGACATCACATGAAACCCAATATGTTGTCACTAATTCAAACAACTACACTTCTAAGAGCAAATCTTCTAAAAATTCCCCAGTTAGTGTTTTGAGCACAATAAAGCATCCCAACATGGTTAAACTTTTGGGTGCATGTCCAGAGTATGGATGTCTTGTGTATGAATATATGGAAAATGGCAGTTTGGAAGATCGTCTTTTCCAAAAAGATAACACACCAACTATTCAATGGAAAGTCAGATTCAAAATAGCCTCAGAAATTGCCACAGGCCTCTTCTTCCTTCATCAAACAAAGCCTGAGCCTATTGTGCATCGTGACCTCAAGCCAGCAAATATTTTGTTGGACTGCAATTATGCTAGCAAGATCACTGATGTGGGTTTGGCAAGGTTAGTCCCCCCTAGTGTACCCAACAAAACCACTCAGTATCGCAAGACAACAGCAGCTGGTACATTTTGTTACATTGATCCAGAGTATCAGCAAACAGGACTGTTGGGTGTTAAATCAGACATATATTCACTAGGTGTAATGCTACTGCAAATTATAACTAGAAAACCTCCAATGGGTGTGGCTCACTTAGTTCAAGAGGCTATAGACAAAGGTAGATTTTTAGAGGTTCTTGATTCAAATGTCATTGATTGGCCCATTGAAGAGACTTTATCATATGCTAAGTTGGCTTTAAAGTGTTGTGAGATGAGAAAACGAGATAGACCAGACCTTGGTTCTGTCATTTTGCCAGAGTTGAATCGACTTAAAAATTTATAA 1494 0.3922 MGSNAGEEESTLIAIDSDKNSQNAVKWAVEHLLKNNSSCTLVHVRTKNLYQNDLEVFPKQGRPPTEEELHQFFLSFRGFCARKGVSVKELVLHDIDVSKALTNYIIDNSINNIVVGASRSNALIRKFKDVDVPTSLVKSVPQSCMVHVISKRKVQNIRPAGHSQNTTITPSKSLKGIRESFRSKDLNRKSLKYRFWQGSNNEGVSPVTPHKTNGETNSPKLLDETSNKKFLTGDTSRLFDHQTSETSHETQYVVTNSNNYTSKSKSSKNSPVSVLSTIKHPNMVKLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPTIQWKVRFKIASEIATGLFFLHQTKPEPIVHRDLKPANILLDCNYASKITDVGLARLVPPSVPNKTTQYRKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVMLLQIITRKPPMGVAHLVQEAIDKGRFLEVLDSNVIDWPIEETLSYAKLALKCCEMRKRDRPDLGSVILPELNRLKNL* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00263 497 FunFam Os07g0541700 protein 301 392 - -
Lapu5g00263 497 ProSiteProfiles Protein kinase domain profile. 224 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00263 497 MobiDBLite consensus disorder prediction 202 222 - -
Lapu5g00263 497 CDD STK_N 13 151 - -
Lapu5g00263 497 SUPERFAMILY Protein kinase-like (PK-like) 269 487 IPR011009 -
Lapu5g00263 497 Pfam Universal stress protein family 12 146 IPR006016 -
Lapu5g00263 497 PANTHER OS02G0152300 PROTEIN 262 496 - -
Lapu5g00263 497 SMART serkin_6 143 491 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00263 497 Gene3D Phosphorylase Kinase; domain 1 226 304 - -
Lapu5g00263 497 Pfam Protein kinase domain 260 482 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00263 497 ProSitePatterns Serine/Threonine protein kinases active-site signature. 346 358 IPR008271 GO:0004672|GO:0006468
Lapu5g00263 497 Gene3D Transferase(Phosphotransferase) domain 1 305 497 - -
Lapu5g00263 497 Gene3D HUPs 9 150 IPR014729 -
Lapu5g00263 497 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 127 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00263 Lapu-Chr5 2156444 2161091 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00263 261 497 Receptor kinase-like Gene Family AT5G12000 69.198 5.00e-118 358
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Lapu5g00263 Pkinase 3.4e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00263 - - pvu:PHAVU_005G156500g 717.227