Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00255 ATGGAACCACGGGTGGGAAACAAGTTCCGTCTTGGCCGCAAGATTGGTAGCGGATCCTTCGGCGAGATCTATCTCGCTGTGAATATCCAGACAGATGAAGAGGTTGCAATTAAGCTCGAAAATGTCAAAACCAAGCATCCTCAGTTGTTGTATGAATCAAAGTTATATAAAATACTGCGGGGAGGAAGTACTGGGATCCCAAACGTGAGATGGTTTGGTATTGAGGGAGACTACAATGTCCTTGTGATGGATTTACTGGGCCCTAGTCTTGAGGATTTATTCAATTTCTGTACCCGGAAATTGTCCCTCAAAACTGTTCTCATGCTTGCTGATCAGATGATAAATCGAGTTGAATTTATTCATTCAAGATCATTTTTACATAGGGACATCAAGCCAGACAACTTCCTAATGGGTCTGGGGAGGCGTGCAAATCAGGTTTATGCCATTGACTTTGGTCTTGCTAAGAAATACAGAGACACCTCTACCCATCGACATATTACTTACAGAGAGAATAAGAATTTGACTGGAACTGCTAGATACGCTAGTATGAATACTCATCTTGGAATTGAGCAAAGCCGTAGAGACGACTTGGAATCACTTGGATTTGTTCTTATGTATTTTTTGAGAGGAAGTCTCCCGTGGCAGGGATTGAAAGCGAGTACTAAAAAACAGAAGTACGAGAAAATCAGTGAGATGAAAGTTTGTACTTCTATTGAGTCTTTGTGTCGTGGCTACCCTTATGAGTTTGCTTCATACTTCCATTACTGTCGGTCACTGCGATTTGATGATAAACCAGATTATGTTTATTTGAAAAGGCTTTTCCGTGACCTTTTCATTCGTGAAGGATTCCAGTTTGATTACGTCTTTGATTGGACCATTTTGAAATATCAGCAATCCCAAGTTGCCACACCTGCTGCTCGTGTTATTGGTTCTGCTGCTGGACCAAGTTCTGGGTTGCCACCAGCTGTTGTAAATGCTGATAGTAGACAGATTGGTGTTGAGAACAGTAGGCATGCCGGTTGGTCTTCATCTGATCCTGCTCTAAGAAGAAACTCTGGACCTATTGCAAATGATGGAGTTTTGTCAAGACCAGAAGCCCTAGTTCCAAGTGAATCAACTGGATCTAAAGATGTTATGTCGTCTAGTTCTAATTTGTTCCGGCCTCGGGGATCTTCGAGGCGAGGTGCTGTATCCAGCAGTCGTGATGCAGCTGTTGGAAATGAGAGTGAGCCCTCTCATCCTCTCGCCATAGATGCTAGTCCAGGAGCGATCCGTAAAATCTCTGGTGCTCAAAGAAGTTCTATCATGTCATTTGAGCACCACCAAATATCCTCTGGCAAAAGTACATCGAACATGAAGAATTTTGAGTCAACTATCCGATGTCTCGAGACCCTGAATTTCAATGACGAGAGGTTACAGTATTAG 1425 0.4288 MEPRVGNKFRLGRKIGSGSFGEIYLAVNIQTDEEVAIKLENVKTKHPQLLYESKLYKILRGGSTGIPNVRWFGIEGDYNVLVMDLLGPSLEDLFNFCTRKLSLKTVLMLADQMINRVEFIHSRSFLHRDIKPDNFLMGLGRRANQVYAIDFGLAKKYRDTSTHRHITYRENKNLTGTARYASMNTHLGIEQSRRDDLESLGFVLMYFLRGSLPWQGLKASTKKQKYEKISEMKVCTSIESLCRGYPYEFASYFHYCRSLRFDDKPDYVYLKRLFRDLFIREGFQFDYVFDWTILKYQQSQVATPAARVIGSAAGPSSGLPPAVVNADSRQIGVENSRHAGWSSSDPALRRNSGPIANDGVLSRPEALVPSESTGSKDVMSSSSNLFRPRGSSRRGAVSSSRDAAVGNESEPSHPLAIDASPGAIRKISGAQRSSIMSFEHHQISSGKSTSNMKNFESTIRCLETLNFNDERLQY* 475
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00255 474 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Lapu5g00255 474 FunFam Putative Casein kinase I 1 86 - -
Lapu5g00255 474 MobiDBLite consensus disorder prediction 335 421 - -
Lapu5g00255 474 SUPERFAMILY Protein kinase-like (PK-like) 5 291 IPR011009 -
Lapu5g00255 474 ProSiteProfiles Protein kinase domain profile. 9 279 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00255 474 PANTHER CASEIN KINASE-RELATED 9 382 - -
Lapu5g00255 474 Pfam Protein kinase domain 10 230 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00255 474 FunFam Casein kinase I isoform delta-like 1 309 - -
Lapu5g00255 474 SMART serkin_6 9 302 IPR000719 GO:0004672|GO:0005524|GO:0006468
Lapu5g00255 474 CDD STKc_CK1_delta_epsilon 8 283 - -
Lapu5g00255 474 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672|GO:0006468
Lapu5g00255 474 Gene3D Transferase(Phosphotransferase) domain 1 1 310 - -
Lapu5g00255 474 MobiDBLite consensus disorder prediction 335 350 - -
Lapu5g00255 474 MobiDBLite consensus disorder prediction 373 406 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00255 Lapu-Chr5 2096292 2100396 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00255 8 214 MAP Kinase Kinase Kinase AT3G06030 27.027 1.84e-11 64.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Lapu5g00255 Pkinase 7.5e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00255 K02218 - gmx:100778165 812.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00255 5 2096292 2100396 Lapu10g00449 10 6870971 6876104 PCT