Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lapu5g00254 ATGGCTCGGGGAAGGATCAGGGCAAGGCTCCGTAGGAGCCATCTTTACACATTTGGCTGCCTGAAACCAACTACCACTGAGGAGGTGCCTCATTCACTTCAAGGTCCTGGCTACTCGCGAACAGTCTTCTGCAACCAGCCTCAACTCCATGAAAAGAATTCTCTATTTTACTGCAAGAATGATATATCAACCACCAAGTACAATGTCATCACGTTTCTGCCTAAGGCATTGTTTGAACAGTTTCGAAGGGTTGCTAACATATACTTTCTTTTGGCTGCTTGCCTTTCGGCTTCTCCAATTTCACCTTTCAGCCCACTGAGCATGATTGCTCCTCTGGCGTTTGTTGTGGGACTTAGTATGGTGAAGGAGGCATTGGAGGATTCTCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGACGGAAAGTTAATCTCCACAAAGGCGATGGCACTTTTGGCCTAAGATCGTGGCAGAAGATTATGGTTGGGGATGTGGTAAAAGTAGAAAAGGATCAATTTTTTCCGGCCGACTTGCTTCTCTTGGCGTCAAGTTATGAGGATGGAATATGCTATGTGGAGACAATGAATTTAGATGGAGAGACCAACTTGAAGGTGAAGAGATCTCTGGAGGCTACCTTGTCTCTGGATAATGATGAGGCTTTTAAGGATTTCTCTGGAACACTATGTTGTGAAGATCCAAATCCCAGTCTTTACACTTTTGTTGGGAACTTTGAGTATGAAAATCTGGTTTATCCTCTTGATCCTAGTCAAATTCTCCTCAGGGATTCGAAGCTTAGGAACACCGATCATGTTTATGGAGTGGTCATTTTCACTGGACATGATAGCAAAGTTATGCAGAATTCTACAAAATCCCCTTCAAAGAGAAGCACAATAGAAAAAAAGATGGATTATATCATATATACTCTTTTCACTGTCCTTATATTAATATCTTTTATTAGTTCGATAGGATTTGTTGCAAAGACCAAATACCAAGCCCCAACGTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCTGGGAAAATTGGATTGGCTGGGATGAGCCATCTGATTACTGCACTCATTCTCTATGGATATTTGATACCTATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAAGCAACCTTCATTGACCAAGACATTCAAATGTATGATGATGAAACTGGAACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCCGGTACTGCATATGGTGTTCGTTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCCGGACTTGGATATGTCTAATTTCCCCATGCCTAATGAGAGTAAAGTGCCATGGGAAAATATCACTCAAGATGATGAGTCTGAACTGGGGACTGTTGTTAATTCCAATGATGTAGATCGAAGGACTTCCATTAAGGGATTTGGTTTTGAAGATAATCGCCTTATGAATGGTAACTGGTTGAAAGAACCCAATGCTGACGTCCTTTTACTGTTTTTCCGCATATTAGCAATTTGCCATACTGCCATCCCTGAACTAAATGAGGAGACTGACAATTGTACTTATGAGGCTGAGTCACCTGACGAAGGGGCTTTTCTAGTAGCAGCTAGGGAATTTGGTTTTGAGTTTTATAGGAGAACTCAATCAAGTGTTGTCATTCGTGAAAGATTTTCTTCCTCAGGACAACTGGTCCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATTGTGCGCGATGAGGACGGAAACATCATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAAAATGGAAAAATGTATTTGGATGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGTTTGAGAACACTAGCCCTGGCCTATAGAGAGCTTGATGACCAAGAGTACTCTGATTGGAATGACAAGTTTCAGAAGGCCAGAACAGCTGTTGGGCCTGACAGAGAGGCAATGCTTGATCAGGTTTCAGATGTTATGGAAAGAGAGTTGATACTTGTTGGGGCTACTGCTGTGGAGGATAAACTACAGAAAGGGGTGCCTCAATGCATTGACAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGTAGTTTGCTTCGACCGGGCATGAGGCAAATCTGTATCACAATGAATTCAGATTCAGTAACTAATGATTCGAAAGAGGTCATCAAAGGAAACATCTTGAATCAAATCACCAATGCTTCGCAAATGATAAAGCTGGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACGTATGCTTTAGAAAATGATGTCAAACTCCAATTTTTGGGACTGGCTGTTGGCTGTGCATCTGTTATTTGTTGTCGTGTGTCTCCAAAGCAAAAAGCAATGGTTACAAGGCTAGTGAAAGAAGGAACTGGGAAGACCACTTTAGCCATAGGTGATGGTGCAAATGATGTTGGTATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTAATGGCTAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAAAGAATTGCACAAATGATATGTTATTTCTTCTACAAAAATATAGCATTTGGCCTCACAATTTTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCTGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGCTTACAGTTTCCAGCACTGTATCAGCAAGGACCGAAAAACTTGTTTTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTCATCTTCTTCCTCGTCATTATCATCTTCTATGACCAAGCATTCCGTGTCAATGGCCAGGTCGCAGACATGGCTGCTGTTGGTACCACAATGTTCACTTGCATCATCTGGACTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACCTCTTTCTCTTGTTATATGGCATGCTTCCACCAAAATATTGCAAGTCTGCCTACCAAATATTGGTGGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAACAACCCTATTAGTAACAATCACATGCGTTCTTCCTTATCTCGCCCACATATCCTTCCAAAGAAGTTTTCATCCCATGGATCATCATATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCCAAAGCAAGGCACGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCAATTTAAAGGTAAGTTGCAGAAGAAACAGCAGTCTTCACTGGGGTCTTTGTCCCCATCATGA 3669 0.4181 MARGRIRARLRRSHLYTFGCLKPTTTEEVPHSLQGPGYSRTVFCNQPQLHEKNSLFYCKNDISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSPLSMIAPLAFVVGLSMVKEALEDSRRFFQDVKVNRRKVNLHKGDGTFGLRSWQKIMVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDEAFKDFSGTLCCEDPNPSLYTFVGNFEYENLVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQAPTWWYLRPDNIEYQFDPGKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFIDQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEPDLDMSNFPMPNESKVPWENITQDDESELGTVVNSNDVDRRTSIKGFGFEDNRLMNGNWLKEPNADVLLLFFRILAICHTAIPELNEETDNCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFSSSGQLVQREYKILNLLDFTSKRKRMSVIVRDEDGNIILFCKGADSIIFDRLSKNGKMYLDATTRHLNEYGEAGLRTLALAYRELDDQEYSDWNDKFQKARTAVGPDREAMLDQVSDVMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRPGMRQICITMNSDSVTNDSKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALENDVKLQFLGLAVGCASVICCRVSPKQKAMVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRVNGQVADMAAVGTTMFTCIIWTVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLYGMLPPKYCKSAYQILVEVLAPAPIYWTTTLLVTITCVLPYLAHISFQRSFHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARHETKIGFTARVEAKIRQFKGKLQKKQQSSLGSLSPS* 1223
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lapu5g00254 1222 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 41 1175 - -
Lapu5g00254 1222 NCBIfam HAD-IC family P-type ATPase 845 959 IPR001757 GO:0005215|GO:0005524|GO:0016020|GO:0016887
Lapu5g00254 1222 Gene3D - 576 696 IPR023299 GO:0000166
Lapu5g00254 1222 FunFam Phospholipid-transporting ATPase 118 288 - -
Lapu5g00254 1222 Gene3D - 718 918 IPR023214 -
Lapu5g00254 1222 Gene3D - 432 448 IPR023299 GO:0000166
Lapu5g00254 1222 CDD P-type_ATPase_APLT_Dnf-like 60 1038 - -
Lapu5g00254 1222 SUPERFAMILY HAD-like 410 922 IPR036412 -
Lapu5g00254 1222 FunFam Phospholipid-transporting ATPase 722 918 - -
Lapu5g00254 1222 FunFam Phospholipid-transporting ATPase 589 720 - -
Lapu5g00254 1222 Pfam Cation transport ATPase (P-type) 545 649 - -
Lapu5g00254 1222 SFLD p-type atpase 404 929 IPR044492 -
Lapu5g00254 1222 Gene3D - 116 288 - -
Lapu5g00254 1222 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Lapu5g00254 1222 PRINTS P-type cation-transporting ATPase superfamily signature 878 897 - -
Lapu5g00254 1222 Pfam Phospholipid-translocating P-type ATPase C-terminal 906 1156 IPR032630 -
Lapu5g00254 1222 SUPERFAMILY Calcium ATPase, transmembrane domain M 53 1153 IPR023298 -
Lapu5g00254 1222 Gene3D - 419 431 IPR023214 -
Lapu5g00254 1222 Pfam Phospholipid-translocating ATPase N-terminal 42 109 IPR032631 -
Lapu5g00254 1222 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 521 684 IPR023299 GO:0000166
Lapu5g00254 1222 SUPERFAMILY Calcium ATPase, transduction domain A 147 286 IPR008250 -
Lapu5g00254 1222 NCBIfam phospholipid-translocating P-type ATPase 57 1164 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016020|GO:0140326
Lapu5g00254 1222 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Lapu5g00254 1222 SFLD Haloacid Dehalogenase 404 929 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lapu5g00254 Lapu-Chr5 2086774 2094092 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lapu5g00254 1 1221 Primary Pumps ATPases AT1G17500 74.349 0.0 1910
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Lapu5g00254 K01530 - gmx:100778710 2228.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lapu5g00254 5 2086774 2094092 Lapu10g00450 10 6878089 6885331 PCT